Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90890g00004 ATGTCAAAGCTGAAAGTAAGGTCATTTCATGCTCAGGAGACAGAAGGACCTCGTGAAAAGGAAACCATTGCAAGTGAAGCAGTACAACCACCTCCAACTCAGATAGAAAATCAGCCACAGGTGTCTGCAAGTTCAACTCCATTGTCAGAACTGTCACCAACTTCTGTTACACAATCTTTATCATCTGTTAATAGTCAAATTGTCCCCATACAAAACGTGACACCTTTGAAGATTAATTATGATCATGTGCCACAATTGGACAAAAAAAATCCTTCTGGTGGCAAACCTGTATCTTGTGGTTCTGTTACAAGGGTTTCAGTTTCTGATGGTTACAGCTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTGCAGGGTCTCGAAGCTATTACAGGTGTACTCATTCAGAATGTTCTGCGAAGAAGATTGAATGCAATGATGATATGGGTCGTGTGATAGATGTTGTTTATAAAAGTCAACACAGTCATGATCCCCCACATAAGCCTAATTCTATTAGGGAAAGTAAGCCAGTGTCTTCCAGTGGACCTCCTAATGTAGAAAACAAAGTTTCTCAGCAGCTATCTTTCAGAGGTCTGAAAAACTCTGATCCATCCCCTTCAAAAGAACCCTTACAAGATGCACCTCGCAGTGTTGACAAGAAAAGACAAAACTCATCTAATCTCAGTGACAATGGTAAAGTTGTTTTGAAGGAGGAACATCTTAATGAGTCAGAGCCAAAGAAAAGAATGAAGAAAGATGACTTAGCAGACTTGGATTCTCCTGTAAAATCTGGAAAGAAATCCAGGTTTGTTGTACATGCGGAAGGGGATGTAGGTATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAGATGGTGAAGGGGAATCCACATCCGAGAAACTACTACAGATGTACTTCTGCTGGATGTCCTGTCCGAAAACACATTGAGACCGCTGTTGATAACTCGAACGCTGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCAAAGAAACGACATGGGCCACTAAGTGCTCCTCTCGTGGCTGCTGCATCACCGACTTCCATGAACACGTCGCAGTCTAAGAAAAATCCTGATTCTCCTAAAAAACAGAACAAGTCTACTCAATGGTCGGTGGACACTGAAGGAGGAGAACTAAGCGGGGAAGCAATGGATCTTGGAGGTGAAAAGGCAATAGAGTCAGCTCGCACACTTCTGAGCATAGGTTTTGAAATTAAGCCATGCTGA 1269 0.4295 MSKLKVRSFHAQETEGPREKETIASEAVQPPPTQIENQPQVSASSTPLSELSPTSVTQSLSSVNSQIVPIQNVTPLKINYDHVPQLDKKNPSGGKPVSCGSVTRVSVSDGYSWRKYGQKQVKSPAGSRSYYRCTHSECSAKKIECNDDMGRVIDVVYKSQHSHDPPHKPNSIRESKPVSSSGPPNVENKVSQQLSFRGLKNSDPSPSKEPLQDAPRSVDKKRQNSSNLSDNGKVVLKEEHLNESEPKKRMKKDDLADLDSPVKSGKKSRFVVHAEGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSNAVIITYKGVHDHDMPVPKKRHGPLSAPLVAAASPTSMNTSQSKKNPDSPKKQNKSTQWSVDTEGGELSGEAMDLGGEKAIESARTLLSIGFEIKPC 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90890g00004 422 ProSiteProfiles WRKY domain profile. 276 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 Gene3D WRKY domain 265 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 Gene3D WRKY domain 98 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 27 62 - -
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 357 389 - -
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 1 22 - -
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 159 262 - -
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 357 401 - -
Stsc90890g00004 422 Pfam WRKY DNA -binding domain 109 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 Pfam WRKY DNA -binding domain 283 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 38 373 IPR044810 GO:0003700
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 233 262 - -
Stsc90890g00004 422 FunFam WRKY transcription factor 267 342 - -
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 173 208 - -
Stsc90890g00004 422 ProSiteProfiles WRKY domain profile. 108 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 SUPERFAMILY WRKY DNA-binding domain 103 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 SUPERFAMILY WRKY DNA-binding domain 277 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 SMART WRKY_cls 281 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 SMART WRKY_cls 107 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00004 422 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90890g00004 Stsc-Chr90890 13874 17295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90890g00004 34 422 WRKY Transcription Factor Family AT4G30935 52.174 1.69e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90890g00004 WRKY 1.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90890g00004 - - gmx:100127377 583.948