Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90889g00009 ATGATCATCTTCTTATGTTACAGCATTGGCAGTTTCTCTTTTGGTTTTGCTTCCAATGATGAAGTTTCTGCTTTGCTTTCTATAAAAGCAAGACTCATTGATCCATTGAATGCCCTCCATGATTGGAAGGATTCAGCTTATTGCACATGGACTGGTGTGTCATGCAACTCAGATGGAGCAGTAGAGAAGCTTGATCTCTCTCACAAGAATCTCAGTGGTGCCATATCCAATGATATTCTGAGGCTTAAAAGTCTCTCCTCTCTAAACTTGTGCTGCAATGGATTCTCATCAACTCTGCCTAAATACATAGCCAATCTCACCACTTTGAAGAGTCTTGATGTGAGTCAGAACCTATTCAGTGGTGAATTTCCATCAGGACTTGGAAGGGCATGGAGACTTATGAGCTTAAATGCATCCAGCAATGAGTTCACAGGGCTTCTTCCAGGAGACCTTGGAAATGCTTCTTCATTGGAGATGTTGGATCTCAGAGGAAGCTTCTTTGAAGGATCAATTCCAGAATCATTCAGCAACTTGCATAAGTTGAAGTTCCTTGGTCTATCTGGGAACAATCTCACTGGGAAGATTCCTGGACAGTTAGGACAACTTTCATCATTGGAGTTTATGATCCTCGGATACAATGAATTCCAAGGTGGGATTCCATCAGAGTTTGGAAACCTCACAAGCCTTAAGTATCTTGATTTGGCAGTGGCCAATCTTGGTGGTGAGATTCCAGCAGCATTTGGAAATCTCAAGTCATTGAATACAATGTTCTTGTACAACAACAATTTAGAAGGAAGTATTCCACTGGAGATTGGTAACATGAGTTCTTTGCAGTTGCTGGATCTCTCTGATAACATGCTTTCAGGTGAAATTCCACCTGAAATAAGTCAGCTGAGGAATCTGCAGCTGCTCAACTTCATGGGAAACAAGCTGTCCGACGCGGTCCCTTCCGGTCTTGGAGACTTGCCTAAACTCGAGGTTCTTGAGCTTTGGAACAATTCATTGTCAGGGGAATTGCCTAATAATCTTGGAAAGAATTCACCATTGCAATGGTTGGATGTTTCATCCAATTCACTCTCTGGTGAGATTCCAGAAACTCTTTGCAGCCATGGGAATCTCACCAAGCTAATACTCTTCAACAATGCCTTCTCTGGTCGAATTCCAACGAGCTTATCGACATGTAATTCCCTTGTTCGTGTCAGAATACAGAACAATCTTCTTTCTGGAACAGTTCCTGTTGGTCTTGGCAAGCTTGGGAAGCTTCAGAGGTTAGAATTGGCTAACAACACTCTCACAGGCGGAATCCCTGATGACATTGCTTCTTCAACATCACTTTCCTTCATTGATCTCTCAAGAAACAAACTACATTCTTCTCTTCCTTCCACCATTCTTTCCATTCCAAACCTTCAGGCTTTCATGGTCTCTAACAACAACTTGGTAGGTGAGATTCCAGACCAATTCCAGGACTGCCCAGCGCTTTCAGTTCTTGACCTCTCATCAAATCAATTCTCTGGAGGCATTCCAGCAAGCATAGCTTCTTGCCAGAAATTGGTGGAACTGAATCTAAGAAGGAACCAGTTGACAGGTGAAATCCCAAAAGCAATAGCCAACATGCCAACATTGGCCATTCTTGATCTTTCAAGCAACTCCCTCGGCGGCCAAATACCAGAGAGTTTCGGTGTTTCCCCAGCTCTGGAATCCTTCAATGTCTCATACAATAAGCTTGAAGGCTCTGTGCCAGCTAATGGAATCTTAAGAACCATAAACCCGAATGATCTTGTGGGCAATGCTGGTCTATGTGGTGGTGTCCTCCCTCCTTGTGGTCTAAACTTATCGTTTTCATCAAGGCATGGAAGCTCACACACAAGGCGCATTGTTACAGGATGGATCATTGGGATATCATCAATCTTAGTCGTTGGGATTGTGATCTTGGTAGCCAGATCTTTATACACCAGGTGGTACACCAATGGCTCCTGCCTTGGTGAAAGATTTTACAAAGCTACCGGGATTGTTTACAAGGCTGAGATACCACAATCAAGTACAGTTGTGGCAGTGAAGAAATTGTGGAGAGCAGGATCTGATGTTGAAGTAGGTAGTAGCAGCAATGATCTTGTTGGAGAGGTGAATCTCTTAGGGAGGTTAAGGCATAGGAACATCGTTAGACTATTAGGATTTCTTCATAACGACACAGATTTGATGATAGTTTATGAATACATGCACAATGGCAACCTGGGAGATGCCTTGCATGGCAAACAAGCAGCAAGATTACTTGTAGATTGGGTTTCTCGGTATAACATTGCTCTAGGAGTTGCTCAAGGACTTGCTTATCTTCATCATGATTGCCATCCACCAGTTATTCATCGCGACATCAAATCAAACAACATATTGCTTGATGCAGATTTGGATGCAAGGATAGCAGATTTTGGATTGGCCAAGATGATGATCCGGAAGAATGAGACAGTTTCCATGGTGGCTGGATCCTACGGCTACATAGCCCCAGAATATGGATATGCATTGAAGGTGGATGAGAAGATAGATGTGTATAGCTATGGAGTGGTTCTGTTAGAGCTGCTGACAGGTAAGCGGCCGACGGATCAGGAGTTCGGAGAGAGTGTAGACATTGTAGAGTGGATTAGAAGGAAGTTGAGGGACAACAAGAATCTAGAAGCAGCATTAGACCAAAATGTAGTAGGAAACAGTAGGCATGTGTTAGAGGAGATGCTGTTAGTTCTAAGAATAGCACTTCTTTGCACTGCAAAGCTTCCAAGGGAGAGACCAACCATGAGGGATGTGATAATGATGCTTGAAGAGGCAAAACCAAGGAGAAAGAGTAGCAGCAACACCAACAACAAAAATGAAACAACTTGTTCAACTAACAACAGCAGCAGCAGAGAGGTTCCAGTTTTTAGTCCATCACCAGTTATTGGCCTTGTGTAG 2937 0.4321 MIIFLCYSIGSFSFGFASNDEVSALLSIKARLIDPLNALHDWKDSAYCTWTGVSCNSDGAVEKLDLSHKNLSGAISNDILRLKSLSSLNLCCNGFSSTLPKYIANLTTLKSLDVSQNLFSGEFPSGLGRAWRLMSLNASSNEFTGLLPGDLGNASSLEMLDLRGSFFEGSIPESFSNLHKLKFLGLSGNNLTGKIPGQLGQLSSLEFMILGYNEFQGGIPSEFGNLTSLKYLDLAVANLGGEIPAAFGNLKSLNTMFLYNNNLEGSIPLEIGNMSSLQLLDLSDNMLSGEIPPEISQLRNLQLLNFMGNKLSDAVPSGLGDLPKLEVLELWNNSLSGELPNNLGKNSPLQWLDVSSNSLSGEIPETLCSHGNLTKLILFNNAFSGRIPTSLSTCNSLVRVRIQNNLLSGTVPVGLGKLGKLQRLELANNTLTGGIPDDIASSTSLSFIDLSRNKLHSSLPSTILSIPNLQAFMVSNNNLVGEIPDQFQDCPALSVLDLSSNQFSGGIPASIASCQKLVELNLRRNQLTGEIPKAIANMPTLAILDLSSNSLGGQIPESFGVSPALESFNVSYNKLEGSVPANGILRTINPNDLVGNAGLCGGVLPPCGLNLSFSSRHGSSHTRRIVTGWIIGISSILVVGIVILVARSLYTRWYTNGSCLGERFYKATGIVYKAEIPQSSTVVAVKKLWRAGSDVEVGSSSNDLVGEVNLLGRLRHRNIVRLLGFLHNDTDLMIVYEYMHNGNLGDALHGKQAARLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDADLDARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPTDQEFGESVDIVEWIRRKLRDNKNLEAALDQNVVGNSRHVLEEMLLVLRIALLCTAKLPRERPTMRDVIMMLEEAKPRRKSSSNTNNKNETTCSTNNSSSREVPVFSPSPVIGLV 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90889g00009 978 SMART serkin_6 654 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90889g00009 978 SUPERFAMILY RNI-like 243 580 - -
Stsc90889g00009 978 Gene3D Ribonuclease Inhibitor 20 132 IPR032675 -
Stsc90889g00009 978 Gene3D Transferase(Phosphotransferase) domain 1 743 964 - -
Stsc90889g00009 978 Gene3D Ribonuclease Inhibitor 133 220 IPR032675 -
Stsc90889g00009 978 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 351 611 - -
Stsc90889g00009 978 MobiDBLite consensus disorder prediction 947 968 - -
Stsc90889g00009 978 Pfam Leucine rich repeat N-terminal domain 19 56 IPR013210 -
Stsc90889g00009 978 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 166 266 - -
Stsc90889g00009 978 MobiDBLite consensus disorder prediction 938 978 - -
Stsc90889g00009 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Stsc90889g00009 978 SMART LRR_typ_2 538 562 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 274 298 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 322 346 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 466 489 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 418 442 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 106 130 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 82 105 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 178 202 IPR003591 -
Stsc90889g00009 978 SMART LRR_typ_2 226 249 IPR003591 -
Stsc90889g00009 978 Gene3D Ribonuclease Inhibitor 303 612 IPR032675 -
Stsc90889g00009 978 FunFam Leucine-rich repeat receptor protein kinase EMS1 267 350 - -
Stsc90889g00009 978 SUPERFAMILY L domain-like 47 338 - -
Stsc90889g00009 978 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Stsc90889g00009 978 Pfam Leucine rich repeat 467 527 IPR001611 GO:0005515
Stsc90889g00009 978 PANTHER UNNAMED PRODUCT 156 867 - -
Stsc90889g00009 978 Gene3D Ribonuclease Inhibitor 221 302 IPR032675 -
Stsc90889g00009 978 FunFam MDIS1-interacting receptor like kinase 1 743 954 - -
Stsc90889g00009 978 ProSiteProfiles Protein kinase domain profile. 654 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90889g00009 978 SUPERFAMILY Protein kinase-like (PK-like) 667 936 IPR011009 -
Stsc90889g00009 978 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 18 165 - -
Stsc90889g00009 978 Pfam Protein kinase domain 668 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90889g00009 978 Gene3D Phosphorylase Kinase; domain 1 660 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90889g00009 Stsc-Chr90889 46988 50115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90889g00009 2 978 Receptor kinase-like Gene Family AT1G08590 56.593 0.0 1104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90889g00009 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90889g00009 - - gmx:100789665 1502.26