Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90889g00005 ATGTCTACAACACTATCTTCTAACACCCTTTTGAATGAGATCCTCTCTTTGCCAGTTTTGGAGCTTGTGGCAACGTGTGCCAACTTGGCACTGCTGCTTGTGTTTCTCATTGTTATCTTTTCAAGGAAGGTGCTTGTGAACGTGGCAAGTGTTGGGTATGGCAATAAGGATGATATTGCCAGCAATGGCAGTACAGTTAGTCCTAGACTTGTTGATGCAGAAGAACATGAAGTTAGGATTAGTGCATGGTTTAAGCTTTCGGTCTTGTCTTGTCTCTATGTTCTGTTGGTGCAGCTAGTGGTGTTGGGGTTTGATGTTGTAGCTTTGGTTCAAGGGAAGGGTAATTTGTCTGTGATTCTGTTGCCGGTTGCTCAGGTTTTGGCTTGGATTGTGTTGAGCTTCTTGGCTTTGCATTGCAAGGCTGAGAGGTGTGACAGGTTTCCATTTTTGTTGAGAGTTTGGTGGAGTGCTTCATTTGTTATTTGTTTGTTCACTTTGTATGTTGATGGGAGAGGGTTTTGGGAGGAGGGTTACAAGCACTTGCAGTCTCATGTTGCGGCGAATTTAGCTGCCACGCCTGCACTTGCCTTCTTGTGTTTTGTTGCTGCTAGAGGGGTTACTGGTATTGAAGTTTGTGGGGATTCTGAGGCTCGAGAACCGTTGCTTGCTGAAGAAGAATCAGGGTGTCTCAAGGTTACTCCATACAGTGAGGCTGGAATTTTCAGCTTGGCTACTCTGTCTTGGCTGAATCAAATTCTTTCCCTTGGCGCGAGGCGACCATTGGAGCTTAAGGACATTCCTCTAGTGGCACGGAAGGATCGATCTAAGACGAATTATAAGATTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATCCGTCCGGGCGGCCTTCGTTAGCTTGGGCACTTCTGAGGTCATTTTGGAAGGAGGCAGCTTGGAATGCCATCTTTGCTGGTTTGACCACTCTTGTCTCATATGTAGGTCCTTACATGATAAGTTACTTTGTTGATTACTTGAGTGGCAAGCAATCTTATCCGAGCGAGGGCTATGTCCTCGCCGGGATATTCTTTGTGGCAAAGCTTGTTGAGACCTTTACAACTCGTCAATGGTATCTAGGAGTGGATATCATGGGCATGCATGTTAGATCGGCTCTAACAGCGATGGTGTATCGAAAGGGGCTTAGACTCTCGAGCTTAGCCAAGCAAAGTCACACAAGTGGAGAGATTGTTAACTACATGGCTGTAGATGTTCAGAGAGTAGGGGACTACTCCTGGTACCTTCATGACATGTGGATGCTTCCTATGCAGATTGTTCTTGCCCTTCTGATCTTGTACAAGAATGTTGGAATTGCTGCTTTTGCAACACTGGTTGCTACCATCATTTCCATTGCTGTCACTGTCCCAGTAACTCGGATCCAAGAAGATTATCAGGACAAGTTAATGGCCGCGAAAGATGAAAGGATGAGAAAAACATCTGAGTGCTTAAGGAACATGAGGATTCTCAAGCTGCAAGCTTGGGAAGACAGGTACGAAACAAAGTTAGAGGAGATGCGCGGGGTAGAGTTCAGGTGGCTTCGGAAAGCCCTTTACTCGCAGGCTTGCATAACCTTCATATTCTGGAGCTCCCCCATATTTGTTTCAGCTGTCACTTTCGCTACCTGCATATTGTTGGGTGGTGAATTGACTGCAGGTGGTGTGCTTTCTGCTCTGGCTACTTTCAGGATTCTCCAAGAACCTCTGAGGAACTTTCCAGACTTGTTTTCAACAATGGCTCAGACTAAAGTTTCTATTGATAGATTATCTTGTTTCCTGCTGGAGGAAGAGTTGCAGGAAGATGCAACTATTGTTTTACCAAACGGAATCTCTAATGTTGCAGTAGAAATTAAGGATGGTGTCTTCTCTTGGGACCCTTTATCATCTTCTAGGCCTACTCTATCAGGGATACAAATGAAGGCTGAAAAAGGAATGTGTGTCGCTGTTTGCGGTATGGTTGGTTCTGGGAAATCAAGTTTCCTTTCTTGCATCCTTGGAGAGATTCCTAAGATTTCTGGTGAAGTAAGGTTGTGTGGCTCGTCTGCATACCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTCAGTGCAGTTGATGCTCACACCGGATCAGAATTGTTTCGGGAGTATATATTGACAGCACTAGCAAATAAAACAGTCATCTATGTGACACATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATACTGGTTCTCAAAGAAGGCAGCATCATACAAGCTGGAAAATATGATGATCTCTTACAAGCAGGAACAGATTTTAATGCTCTAGTTTCTGCTCACCATGAAGCCATAGAGGCTTTGGATATTCCTAGTTTATCATCCGGAGATTCAGAAGAACATTTATCCTTAAATGGATTGGTTATGTCCAGTAAGAAGTCCATTTGTTCTGCAAATCACATTGATGATTTGGCGAAGGAACTGCAAGAGGGATCATCCACATCAGATCAAAAAGCAATTAAGGAGAAGAAGAAAACAAAACGCTCAAGGAAAAAACAGCTAGTTCAAGAAGAGGAAAGGGTCAGAGGTAGAATCAGTATGAAGGTGTATTTGTCATACATGGCAGCAGCATATAAAGGCTTGTTGATTCCTCTAATAATCATCGCGCAAACGTTATTTCAGTTTCTACAGATTGCTAGTAATTGGTGGATGGCTTGGGCTAATCCACAAACCGAAGGAGACCTGCCGAAAGTATCTCCTGCAGAACTTCTTGTTGTTTACATGGCCCTTGCATTCGGCAGCTCAGGTTTTATATTTATAAAGTCTATTCTGGTTGCTACATTTGGTCTTGGAGCAGCTCAGAAGCTATTCTTGAAGATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTCGACTCTACACCTGCCGGAAGGATCTTGAATCGAGTATCAGTTGATCAGAGTGTTGTGGATCTTGACATTCCTTTCAGGCTCGGCGGCTTTGCTTCCACAACAATACAACTTATTGGTATGGTTGGTGTGATGACAGAAGTCACATGGCAAGTTTTGCTGCTAGTTATCCCAATGGGTGTTGCTTGTTTGTGGATGCAGAAATACTATATGGCTTCGTCGAGGGAACTAGTCCGAATTGTAAGCATCCAGAAGTCTCCAATTATAAATCTCTTTGCTGAATCAATTGCTGGAGCATCTACCATAAGAGGATTTGGACAAGAAAAGAGGTTCATGAAGCGGAATCTCTATCTTCTAGATTGCTTTGCTAGGCCATTCTTCTGCAGTCTTGCTGCTATTGAATGGCTCTGCTTGCGGATGGAGTTACTGTCAACTTTTGTATTTGCATTTTGTATGGTATTACTTGTAAGCTTTCCCCATGGAAGCATTGATCCCAGCATGGCTGGACTAGCTGTGACTTATGGTCTCAATTTAAATGCACGTTTATCGCGATGGATACTTAGCTTCTGCAAACTCGAAAATAAGATCATTTCTATTGAGAGAATTTACCAGTACAGTCAAATTCCTAGTGAAGCACCAGCAATCATTGAAGATTTTCGCCCTCCACCCTCATGGCCTGAACATGGAACAATAGAAATAATTGATTTGAAGGTGAGATATAAGGAGAATCTTCCTATGGTGCTTCATGGAGTTTCTTGCACGTTTCCTGGCGGGAAAAAGATCGGAATAGTTGGACGTACCGGCAGTGGCAAATCAACTTTGATTCAGGCGTTATTTCGGTTGATTGAGCCGTCATCCGGGAGGATACTTATAGACAACATTGATATCTCACACATTGGCCTTCATGATCTTAGGAGCCATTTAAGTATCATACCACAAGAGCCAACCTTATTCGAAGGCACCATTCGCGGCAATCTTGATCCTCTTGAGGAGCACTCTGATCAACACATTTGGGAGGCTTTGCACAAGTCTCAGCTTGGAGATATTATCCGTGAGAAAGATCAAAAGCTCGACACGCCAGTGCTGGAAAATGGAGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCACTAGGCCGGGCTCTTCTGAAGCAATCAAAAATACTTGTACTCGACGAAGCAACCGCATCAGTTGATACTGCCACTGATAATCTTATCCAGAAGATTATACGAGATGAGTTTAAAGACTGTACTGTCTGCACCATTGCACATCGCATTCCCACGGTTAGAGACAGTGATCTTGTTCTAGTCCTTAGTGATGGTCGAGTTGCCGAATTTGACACTCCATCGCGACTATTAGAGGACAAGTCCTCCATGTTTCTCAAGTTGGTGACTGAATATTCATCGAGATCTAGTGGCATACCGGATTTCTAA 4359 0.4354 MSTTLSSNTLLNEILSLPVLELVATCANLALLLVFLIVIFSRKVLVNVASVGYGNKDDIASNGSTVSPRLVDAEEHEVRISAWFKLSVLSCLYVLLVQLVVLGFDVVALVQGKGNLSVILLPVAQVLAWIVLSFLALHCKAERCDRFPFLLRVWWSASFVICLFTLYVDGRGFWEEGYKHLQSHVAANLAATPALAFLCFVAARGVTGIEVCGDSEAREPLLAEEESGCLKVTPYSEAGIFSLATLSWLNQILSLGARRPLELKDIPLVARKDRSKTNYKILNSNWERLKAENPSGRPSLAWALLRSFWKEAAWNAIFAGLTTLVSYVGPYMISYFVDYLSGKQSYPSEGYVLAGIFFVAKLVETFTTRQWYLGVDIMGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKNVGIAAFATLVATIISIAVTVPVTRIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYETKLEEMRGVEFRWLRKALYSQACITFIFWSSPIFVSAVTFATCILLGGELTAGGVLSALATFRILQEPLRNFPDLFSTMAQTKVSIDRLSCFLLEEELQEDATIVLPNGISNVAVEIKDGVFSWDPLSSSRPTLSGIQMKAEKGMCVAVCGMVGSGKSSFLSCILGEIPKISGEVRLCGSSAYLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALANKTVIYVTHQVEFLPAADLILVLKEGSIIQAGKYDDLLQAGTDFNALVSAHHEAIEALDIPSLSSGDSEEHLSLNGLVMSSKKSICSANHIDDLAKELQEGSSTSDQKAIKEKKKTKRSRKKQLVQEEERVRGRISMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLPKVSPAELLVVYMALAFGSSGFIFIKSILVATFGLGAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTTIQLIGMVGVMTEVTWQVLLLVIPMGVACLWMQKYYMASSRELVRIVSIQKSPIINLFAESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDFRPPPSWPEHGTIEIIDLKVRYKENLPMVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPSSGRILIDNIDISHIGLHDLRSHLSIIPQEPTLFEGTIRGNLDPLEEHSDQHIWEALHKSQLGDIIREKDQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRDEFKDCTVCTIAHRIPTVRDSDLVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90889g00005 1452 FunFam ABC transporter C family member 5 850 1187 - -
Stsc90889g00005 1452 Pfam ABC transporter transmembrane region 890 1131 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90889g00005 1452 Pfam ABC transporter transmembrane region 317 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90889g00005 1452 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90889g00005 1452 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 496 784 IPR003439 GO:0005524
Stsc90889g00005 1452 SMART AAA_5 1232 1417 IPR003593 GO:0016887
Stsc90889g00005 1452 SMART AAA_5 655 769 IPR003593 GO:0016887
Stsc90889g00005 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1197 1436 IPR027417 -
Stsc90889g00005 1452 Coils Coil 844 864 - -
Stsc90889g00005 1452 Gene3D - 1189 1442 IPR027417 -
Stsc90889g00005 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 773 IPR027417 -
Stsc90889g00005 1452 SUPERFAMILY ABC transporter transmembrane region 301 601 IPR036640 GO:0005524|GO:0016020
Stsc90889g00005 1452 Gene3D ABC transporter type 1, transmembrane domain 284 610 IPR036640 GO:0005524|GO:0016020
Stsc90889g00005 1452 Gene3D ABC transporter type 1, transmembrane domain 848 1187 IPR036640 GO:0005524|GO:0016020
Stsc90889g00005 1452 Gene3D - 622 695 IPR027417 -
Stsc90889g00005 1452 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 889 1159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90889g00005 1452 Gene3D - 696 793 IPR027417 -
Stsc90889g00005 1452 CDD ABC_6TM_ABCC_D2 887 1181 IPR044726 GO:0140359
Stsc90889g00005 1452 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 696 1443 - -
Stsc90889g00005 1452 FunFam ABC transporter C family member 3 1189 1441 - -
Stsc90889g00005 1452 MobiDBLite consensus disorder prediction 833 857 - -
Stsc90889g00005 1452 Pfam ABC transporter 1223 1371 IPR003439 GO:0005524
Stsc90889g00005 1452 FunFam ABC transporter C family member 10 296 609 - -
Stsc90889g00005 1452 SUPERFAMILY ABC transporter transmembrane region 886 1186 IPR036640 GO:0005524|GO:0016020
Stsc90889g00005 1452 CDD ABC_6TM_ABCC_D1 314 601 IPR044746 GO:0140359
Stsc90889g00005 1452 CDD ABCC_MRP_domain2 1204 1424 - -
Stsc90889g00005 1452 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1206 1440 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90889g00005 Stsc-Chr90889 23592 29764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90889g00005 1204 1439 Calmodulin-binding Proteins AT2G36910 33.891 2.90e-33 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90889g00005 - - csv:101209527 2172.9