Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90885g00011 ATGACAGCTGCAAGTGCTTCTCATCTGAATCCCACAAGCACAGGCACAGGCACAGCACACACTCTTCAATGGAACATGTTGCCATACGTAATAAGCTTCATCCTGTTGCTGGGCCTGGTAGAACAGATCAAGTACATGAGCAAGAAGAGGTCCATCCCAGGCCCAAGCGTGGTCCTCCCCTTCATAGGGAACGCCATCCCATTGGTCCGGAACCCAACCAAGTTCTGGGACCAACAATCCAACCTCGCCAAGTCAACCACCGCAGGACTCTCTGTAAACTACATCATCGGCAACTTCATAGTCTTCATAAGAGACACAGAGCTCTCCCACAAGGTCTTCGCCAATGTCAGGCCCGACGCCTTCAGGCTCGTGGGCCACCCATTCGGTAAGAAGCTCTTCGGTGAGCACAACCTCATCTACATGATGGGCCAAGACCATAAGAATCTCCGCCGTCGAATCGCACCCAACTTCACTCCAAAGGCTCTTTCCACATACACCGCGCTGCAGCAGATCATAATCCTCAACCATCTCAAGTCCTGGGTTCAGCTCTCACACAAAGCCCAAGCCCCGATTCCGCTCCGCGTTTTAGCCCGGGACATGAACTTAGACACCTCTCAGACGGTCTTCGTTGGCCCCTATTTGACCCCCAAGGCCCGCCAGACCTTCGAGAGGGATTACTATCTATTCAACGTCGGTCTCATGAAACTCCCCATCGACCTCCCTGGCATGTCCTTCCGAAACGCCAGGCTCGCCGTCGATCGTCTTGCCGGAACACTAGCTACCTGCACGGCTATGAGCAAGAAGAGGATGGACAACGGAGACGAACCTTCCTGCTTAATAGATTACTGGATGCAGGAAACGCTACGAGAGATCCAAGAGGCCAAACTCGCCGGAGATACTTCACCTCCGCCATATTCCTCCGACGCCGAGATTGGTGGATACCTCTTCGACTTCCTCTTCGCGGCGCAGGACGCCTCCACTTCGTCTCTTCTGTGGGCGGTCACGCTGCTGGACTCTCATCCTCATGTGTTGGCCAGGGTCAGGGAGGAGGTCGCCGGAATCTGGTCTCCGGAGTCCGACGAGTTGATAACGGCGGACCAGTTGAGGGAGATGAGGTACACTCAGGCGGTGGCTCGTGAGGTGGTGAGATTCCGTCCGCCGGCGACGCTGGTGCCACATATCGCGGCGGTAGATTTCCCGTTGACTGAAAAATACGTTGTTCCGAAGGGCGCGATCGTTTTTCCGTCGGTCTACGAGTCATCGTTTCAGGGATTCCCTGAACCGGACCGATTCGACCCGGACCGGTTCTCGGAGGAGAGACAAGAGGACCAGATTTATAAAAGAAACTTTCTGGCCTTTGGTGCTGGGGCCCACCAATGCGTGGGTCAGAGGTACGCCTTGAATCATTTGGTTCTCTTCATAGCGATGTTCGCCACGTTGGTCGATTTCAAGAGAGACAGAACGGACGGCTGCGATGATATTGCATATGTCCCCACCATCTGCCCCAAAGACGATTGCAGGGTGTTCCTCTCTAGGCGTTGCGCACGTTATCCTTCTTTCCCTGAAGTCGTGCACGCCAAATTACCATAG 1590 0.5453 MTAASASHLNPTSTGTGTAHTLQWNMLPYVISFILLLGLVEQIKYMSKKRSIPGPSVVLPFIGNAIPLVRNPTKFWDQQSNLAKSTTAGLSVNYIIGNFIVFIRDTELSHKVFANVRPDAFRLVGHPFGKKLFGEHNLIYMMGQDHKNLRRRIAPNFTPKALSTYTALQQIIILNHLKSWVQLSHKAQAPIPLRVLARDMNLDTSQTVFVGPYLTPKARQTFERDYYLFNVGLMKLPIDLPGMSFRNARLAVDRLAGTLATCTAMSKKRMDNGDEPSCLIDYWMQETLREIQEAKLAGDTSPPPYSSDAEIGGYLFDFLFAAQDASTSSLLWAVTLLDSHPHVLARVREEVAGIWSPESDELITADQLREMRYTQAVAREVVRFRPPATLVPHIAAVDFPLTEKYVVPKGAIVFPSVYESSFQGFPEPDRFDPDRFSEERQEDQIYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFATLVDFKRDRTDGCDDIAYVPTICPKDDCRVFLSRRCARYPSFPEVVHAKLP 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90885g00011 529 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 FunFam Cytochrome P450 61 42 513 - -
Stsc90885g00011 529 SUPERFAMILY Cytochrome P450 45 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS E-class P450 group IV signature 52 69 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS E-class P450 group IV signature 312 338 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS E-class P450 group IV signature 444 460 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS E-class P450 group IV signature 419 437 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS E-class P450 group IV signature 371 387 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PRINTS E-class P450 group IV signature 460 478 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Stsc90885g00011 529 Gene3D Cytochrome P450 41 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90885g00011 529 PANTHER CYTOCHROME P450 26 52 477 - -
Stsc90885g00011 529 CDD CYP61_CYP710 89 506 - -
Stsc90885g00011 529 Pfam Cytochrome P450 53 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90885g00011 Stsc-Chr90885 53001 54590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90885g00011 25 520 Cytochrome P450 AT2G34500 67.742 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90885g00011 K09832 - gmx:100808148 837.41