Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90885g00006 ATGTCACTTTCCTGTGCCAAGAACTTCTTCCAGAGGTTCTGGATGGATGAATTACAAACAGCAAGTTTCTCACACAGCAGCTTCTTGAACAATGATATATTACCATCTCTTGGAGCAAGAATAAACCAGGAAACTCGCCTTCGAAAATACATAGTTTCACCATTCAACCCGCGTTATAGGGCTTGGGAGATGTTACTGGTTGTTCTAGTGGTATACTCTGCCTGGATTTGCCCCTTTGAGTTCGCCTTTCTGTCTTACAAGCAAGATACACTCTTCATCATAGATAACCTTGTCAATGGCTTCTTCGCTGTTGACATCGTCCTTACATTCTTCGTGGCTTATTTAGACAGCCACTCTTATCTTCTAGTTGACGATCCAAAGAAAATTGCAATCAGGTACATATCTACCTGGTTTGCGTTTGATGTATGCTCAACAGCACCATTCCAGCCAATCAGCCTCCTCTTCACAAATCACAGCAGTGAGCTTGGTTTCAAAGTCCTTAACATGCTTCGACTATGGAGACTCAGACGAGTCAGCTCTCTTTTTGCAAGACTCGAAAAGGACATTCGCTTTAATTACTTCTGGACAAGGTGCACCAAGCTTATTGCTGTAACACTGTTTGCAGTACATTGTGCCGGGTGCTTCAACTATCTAATTGCAGATAAGTACCCGGATTCAAAGAGAACCTGGATTGGGGCGACCTACCCGGATTTCAAAGAAGAAAGCCTTTGGGATAGATATGTCACTGCAATGTACTGGTCCATTGTCACTCTTACAACCACTGGCTATGGAGATTTGCATGCAGAGAACACAAGAGAGATGCTGTTTGACATCTTCTACATGCTCTTCAACCTGGGTTTAACATCATATATCATTGGAAACATGACCAACCTAGTTGTTCACTGGACCAGCCGCACCAGAAACTTCAGAGATACAGTGAGAGCAGCCACTGAATTCGCTTCTAGAAACCATCTTCCGCCACAGATACAGGATCAGATGTTGTCACACATATGCTTGAAATTCAAGACAGAAGCATTGAAGCAGCAAGAAACGTTGAATGATCTTCCAAGGGCGATTCGTTCAAGCATAGCACACCATCTCTTCATTCCTGTTGTGCAGAAGCTCTACCTCTTCAAAGGAGTCTCTCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCAGAGTATTTTCCACCCAGGGAAGATGTCATACTGCAAACCGAGTCTTCCACAGACTTCTACGTTCTGGTTTCAGGGGCAGTGGATCTTGTCCGATACGTTGACGGGCAAGAACAACTTCTTGGGAAAATAATTGCAGTAGATACATTTGGTGAGATTGGTGTGCTATATCATGTACCTCAGCCTTTCACAGCTCGGACAACAGAGCTTTCTCAAATACTAAGACTCAAAAGAACATCACTGACGAATGTTTTGCATGCAAATCCCAGAGATGCACAAATTATAACGGATAACCTATTCATGAGGTTAAAGGGGGATCAAGAGTCAGGCTTCCAATATCCAAGTGCAGATCCTGGATTGTTTCTTCAGGAACTGCTTCACGGGGGCAACAAAAGAGACAGATTTTCCCAAGCTCAGGAAGGAAACTGCTTGAATATCAGAGATTCTGAGGCCAATTTGCATGATGGTCGTTATTCAATCAGTGCCGAAGACGGCAAAAGAGACAATCTAGACATGGTTGAAATTCTGCTTGAGAGAGACGCAAATGCCATGGGGTGGACACAAAAAGTTCCAGTGCAACAGCTCAAAAGCAAGAGCATCTCTGACCAAAGAATGAGTTGTGAAAAGGAGATGAAATCTTCAGGAGAATATAGAATAGAGGTTGTGGAGCCAGAAATCCTTAACCTTGATAGGAATGACTCAACCATGAACAAAAGGCAAGATGGTAGCAGATCTATCAAATTCCTATCAGAGAAAGCACGCACAAACTATTGTAGAAATTCTAGTTCTCAAAGTGATACAGAAACTACTAGGTTCATCAAGAAGAGAGTCACAATCCACTTGCAAAGCGGGTGCAAAACTAACCCACAGGGGCAGTACGGGAAGTTGATAATCCTTCCTGAATCATTCCAAGAGCTGCTTAACATTGCTGGTAAGCTTTGA 2124 0.4308 MSLSCAKNFFQRFWMDELQTASFSHSSFLNNDILPSLGARINQETRLRKYIVSPFNPRYRAWEMLLVVLVVYSAWICPFEFAFLSYKQDTLFIIDNLVNGFFAVDIVLTFFVAYLDSHSYLLVDDPKKIAIRYISTWFAFDVCSTAPFQPISLLFTNHSSELGFKVLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADKYPDSKRTWIGATYPDFKEESLWDRYVTAMYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAATEFASRNHLPPQIQDQMLSHICLKFKTEALKQQETLNDLPRAIRSSIAHHLFIPVVQKLYLFKGVSHDFLFQLVSEMEAEYFPPREDVILQTESSTDFYVLVSGAVDLVRYVDGQEQLLGKIIAVDTFGEIGVLYHVPQPFTARTTELSQILRLKRTSLTNVLHANPRDAQIITDNLFMRLKGDQESGFQYPSADPGLFLQELLHGGNKRDRFSQAQEGNCLNIRDSEANLHDGRYSISAEDGKRDNLDMVEILLERDANAMGWTQKVPVQQLKSKSISDQRMSCEKEMKSSGEYRIEVVEPEILNLDRNDSTMNKRQDGSRSIKFLSEKARTNYCRNSSSQSDTETTRFIKKRVTIHLQSGCKTNPQGQYGKLIILPESFQELLNIAGKL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90885g00006 707 Gene3D Helix hairpin bin 301 365 - -
Stsc90885g00006 707 CDD CAP_ED 377 489 IPR000595 -
Stsc90885g00006 707 FunFam Potassium channel KAT2 365 501 - -
Stsc90885g00006 707 Pfam Cyclic nucleotide-binding domain 397 480 IPR000595 -
Stsc90885g00006 707 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90885g00006 707 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90885g00006 707 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90885g00006 707 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90885g00006 707 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90885g00006 707 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90885g00006 707 Gene3D Jelly Rolls 366 498 IPR014710 -
Stsc90885g00006 707 SUPERFAMILY Voltage-gated potassium channels 54 300 - -
Stsc90885g00006 707 SMART cnmp_10 377 494 IPR000595 -
Stsc90885g00006 707 FunFam Potassium channel KAT3 61 301 - -
Stsc90885g00006 707 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Stsc90885g00006 707 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90885g00006 707 SUPERFAMILY cAMP-binding domain-like 304 496 IPR018490 -
Stsc90885g00006 707 Gene3D - 60 300 - -
Stsc90885g00006 707 PANTHER POTASSIUM CHANNEL AKT1 25 501 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90885g00006 Stsc-Chr90885 24246 27214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90885g00006 1 706 Ion Channels AT4G18290 60.754 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90885g00006 K21867 - gmx:100783528 1060.06