Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90884g00011 ATGGTCTTCCCTTCCCTTCCAATCTATCTTGATCCACCCAACTGGTCACAACAGGCTAATCAACAATTAGAAATTGGCTCTCAAAATCTACCAATTCCACCAATTTTACAGCCATCACCTCCAACGACGATTACAGCCGTTGGAGGTGGTGGCTTCCAGGGCTCTATCAGACCGGGATCAATCGCTGATAGAGCCAGACTGGCAAAGATACATCAACCAGAAGTATCACTCAAGTGTCCGAGATGCGAATCAACCAACACGAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACTTGCCGCCGGTACTGGACGAGAGGCGGCGCGCTGAGGAATGTTCCAGTTGGCGGCGGATGCAGAAGGAACAAAAGAAGCAAAGGAACAACAAACACCACCATCAACACCAACAGATCAAAGTCGCCTTTGAATAAACCTAATCATCATCATCTACATGGTGGTGGTGCAGTTGGAGGTTCTAGCTCTGCAAGTGGCAACTCTTCTTCTAGTGGCCGGAATAATAGTAACAGCAACAACAACAATGATGTGAATGTGATGAATCATATCCAAACTCCACCACCACCAACCCAATTTCCATTCTTGCCAACAACTTTGCATCATCATCACTATAGTGGGAGTAGTGATCATGCATCATCACTTCTTTTTGGGCCAAACCCTACTCCTTCATCTTCTTTGGTGGTTAGAAATGGTGGTGGTGGTGGTGATGTTGAGTTACAACAATGGAGGCTTCCGAGTTTGCAACAGTTCCCTAGCTTCTTGAGTAATTTGGAAGCGGCGGCACCGCCACAAATCGGGTTGTTTCATCATCAATTTGATCATCAACAAGGTGGAGAAAATAATAATGGTGAATATGTGAGGGACCATCTTGGAGTTGGAGGTAGGTTTCGTTCTACTAATAATAGTAACAACAATAATAAGATCACAACAATGGCTGATGATGATAATGATTCTAGTGTTGTTGTTGTTGGTGGTGGAATGATCAAAGTGGAAGAGAATAATAAGAATCATAATAATCAAGGAGGGTTGAGTTTATTGTCTAAGAATAATAATGTTTTGGGAAGCAATGATCTGTTTTGGAGTAATAATGGTGGAAGTGGCAATATTAATCATCATCCATGGAATGAAGCTCCTACTTTCACTTCTCCAACAACAACTACTCACTTGTTGTGA 1209 0.4318 MVFPSLPIYLDPPNWSQQANQQLEIGSQNLPIPPILQPSPPTTITAVGGGGFQGSIRPGSIADRARLAKIHQPEVSLKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGTTNTTINTNRSKSPLNKPNHHHLHGGGAVGGSSSASGNSSSSGRNNSNSNNNNDVNVMNHIQTPPPPTQFPFLPTTLHHHHYSGSSDHASSLLFGPNPTPSSSLVVRNGGGGGDVELQQWRLPSLQQFPSFLSNLEAAAPPQIGLFHHQFDHQQGGENNNGEYVRDHLGVGGRFRSTNNSNNNNKITTMADDDNDSSVVVVGGGMIKVEENNKNHNNQGGLSLLSKNNNVLGSNDLFWSNNGGSGNINHHPWNEAPTFTSPTTTTHLL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90884g00011 402 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Stsc90884g00011 402 MobiDBLite consensus disorder prediction 383 402 - -
Stsc90884g00011 402 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 286 IPR045174 GO:0003700|GO:0006355
Stsc90884g00011 402 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Stsc90884g00011 402 MobiDBLite consensus disorder prediction 118 230 - -
Stsc90884g00011 402 MobiDBLite consensus disorder prediction 130 148 - -
Stsc90884g00011 402 MobiDBLite consensus disorder prediction 165 197 - -
Stsc90884g00011 402 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90884g00011 Stsc-Chr90884 55618 57803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90884g00011 1 133 C2C2-Dof Transcription Factor Family AT2G37590 51.572 4.35e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc90884g00011 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90884g00011 - - adu:107486952 463.766