Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90884g00010 ATGGCCGGAAAAGGAGAGGGACCGGCGATCGGTATCGATCTCGGAACTACCTACTCTTGCGTCGGAGTGTGGCAGCATGACCGCGTTGAGATCATCGCCAACGATCAGGGTAACCGTACGACGCCGTCTTACGTGGCGTTCACTGACACCGAGAGGCTCATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTATCAACACCGTTTTTGATGCAAAGAGGTTAATTGGAAGGAGAGTTAGCGATGCCTCAGTTCAGAGTGACATGAAATTGTGGCCATTCAAGGTGGTTGCCGGTGCTGGTGAGAAGCCTATGATTTGTGTTAACTACAAGGGTGAGGAGAAGCAATTCGCAGCCGAGGAGATCTCATCTATGGTCCTAACAAAGATGAGGGAGATTGCTGAGGCTTATCTTGGATCGACTGTGAAGAATGCTGTTGTTACAGTGCCTGCATACTTCAATGACTCTCAGCGTCAGGCAACCAAGGACGCCGGAAACATCTTGATCTTTGATCTTGGTGGTGGTACCTTTGATGTCTCTCTTCTCACCATTGAGGAGGGTATCTTTGAAGTGAAGGCCACTGCCGGAGACACTCATCTTGGAGGAGAGGACTTTGACAACAGGATGGTGAACCATTTCGTTCAGGAGTTCAAGAGGAAGAACAAGAAGGACATTAGTGGAAACCCCAGAGCACTTAGGAGGTTGAGGACAGCATGTGAGAGGGCGAAGAGGACTCTCTCCTCCACCGCTCAGACCACCATTGAGATCGATTCTCTCTTTGAGGGTATTGATTTCTATTCAACAATCACCCGTGCTAGGTTCGAGGAGCTTAACATGGACCTCTTTAGAAAGTGTATGGAGCCTGTTGAGAAGTGTCTCAGGGATGCGAAGATGGACAAGAGCACTGTCCATGATGTTGTACTTGTTGGTGGCTCTACTAGGATTCCCAAGGTTCAGCAGCTATTGCAGGACTTTTTCAATGGGAAGGATCTCTGCAAGAGCATCAACCCTGACGAAGCCGTTGCTTACGGTGCAGCTGTTCAGGCCGCCATCTTGAGTGGTGAAGGCAATGAGAAGGTTCAAGACTTGTTGCTTTTGGATGTCACCCCACTGTCTCTAGGTTTGGAAACTGCTGGAGGTGTCATGACCGTGTTGATTCCCAGGAACACCACCATTCCTACCAAGAAGGAGCAAGTGTTTTCTACCTATTCAGATAACCAACCTGGTGTCTTGATTCAAGTTTATGAAGGTGAGAGAACAAGGACCAGGGACAACAACTTGCTCGGTAAGTTTGAGCTTTCAGGCATTCCTCCAGCACCTCGTGGTGTTCCCCAGATCACCGTTTGCTTTGACATTGATGCCAATGGGATCTTGAATGTCTCTGCTGAGGACAAAACCACTGGGCAGAAGAACAAGATTACCATCACCAATGACAAAGGAAGGTTGTCCAAGGAAGAAATTGAGAAGATGGTTCAAGAAGCAGAGAAATACAAGTCCGAAGATGAGGAGCACAAGAAGAAGGTTGAGGCCAAGAACACCTTGGAAAACTATGCATACAACATGAGGAACACAATAAAGGATGACAAGATCAGCTCAAAGCTTTCCCCAGCTGACAAGACAAAGATTGATGATGCAATTGAACAGGCTATTCAATGGCTTGATGCTAACCAGCTTGCAGAGGCTGACGAATTTGAGGACAAGATGAAGGAGCTTGAGAGCATATGCAACCCCATCATAGCCAAGATGTACCAAGGCGGCGCAGGTGGTGAGGTCGATGATGATGCTCCTCCTGCTGGTGGAAGCGGTGCTGGTCCCAAGATTGAGGAGGTCGACTAA 1839 0.4867 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRVSDASVQSDMKLWPFKVVAGAGEKPMICVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGNILIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKDLCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNTLENYAYNMRNTIKDDKISSKLSPADKTKIDDAIEQAIQWLDANQLAEADEFEDKMKELESICNPIIAKMYQGGAGGEVDDDAPPAGGSGAGPKIEEVD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90884g00010 612 ProSitePatterns Heat shock hsp70 proteins family signature 3. 307 321 IPR018181 -
Stsc90884g00010 612 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc90884g00010 612 SUPERFAMILY Actin-like ATPase domain 164 355 IPR043129 -
Stsc90884g00010 612 Gene3D - 168 249 - -
Stsc90884g00010 612 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 510 590 IPR029048 -
Stsc90884g00010 612 MobiDBLite consensus disorder prediction 586 612 - -
Stsc90884g00010 612 FunFam heat shock 70 kDa protein-like 330 355 - -
Stsc90884g00010 612 FunFam Heat shock protein 70 10 173 - -
Stsc90884g00010 612 FunFam Heat shock cognate 70 kDa protein 2 286 329 - -
Stsc90884g00010 612 SUPERFAMILY Actin-like ATPase domain 9 168 IPR043129 -
Stsc90884g00010 612 Coils Coil 488 508 - -
Stsc90884g00010 612 Gene3D - 512 586 IPR029048 -
Stsc90884g00010 612 Gene3D - 7 167 - -
Stsc90884g00010 612 FunFam Heat shock 70 kDa 358 512 - -
Stsc90884g00010 612 Pfam Hsp70 protein 167 585 IPR013126 GO:0005524|GO:0140662
Stsc90884g00010 612 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 359 516 IPR029047 -
Stsc90884g00010 612 FunFam Heat shock 70 kDa protein 506 612 - -
Stsc90884g00010 612 CDD HSPA1-2_6-8-like_NBD 9 354 - -
Stsc90884g00010 612 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 358 511 IPR029047 -
Stsc90884g00010 612 ProSitePatterns Heat shock hsp70 proteins family signature 2. 170 183 IPR018181 -
Stsc90884g00010 612 FunFam Heat shock 70 kDa 202 285 - -
Stsc90884g00010 612 FunFam Heat shock 70 kDa protein 71 126 - -
Stsc90884g00010 612 Gene3D - 252 338 - -
Stsc90884g00010 612 PANTHER HEAT SHOCK PROTEIN 70KDA 9 550 IPR013126 GO:0005524|GO:0140662
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 58 66 - -
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 304 320 - -
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 36 48 - -
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 363 382 - -
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 444 460 - -
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 336 356 - -
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc90884g00010 612 PRINTS 70kDa heat shock protein signature 176 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90884g00010 Stsc-Chr90884 45046 47905 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90884g00010 1 612 Calmodulin-binding Proteins AT3G12580 86.923 0.0 1137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90884g00010 K03283 - gmx:100789485 1132.86