Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90884g00001 ATGGCCGCCGGCATGGATATGTCTCTCGATGACGTCATCAAGAGGTCCGCCGCCGATTCCGCTGCTCGCCGCCGCCAAAGGCAACCTATCTGGGGCCCCGGTCCCGACCGCCGCATCCCTAGTCGTCTCTCCGCCCCAATGACGCCCTACCCCGTCTCACAGAATGATTTGCAGGTGGGAAGGCAAATGATGCAAGGGAGTGTTATTCCTGGTGTTGGAGTGGTTATGGGTCACGGAGCTGGAGCTGGAGCTGAACCTGACACTGAAACCAAACTCTATGTTTCTAACTTGGATTATGGTGTTTCCAATGAAGATATTAAGCTTCTGTTTGCAGAAGAGGGCGAGTTAAAGAGATACTCCATCCATTATGACAAGAGTGGGAGATCAAAGGGGACAGCGGAAGTTGTCTTTGTGAGGAAGTCTGATGCTCTAGCAGCCATGAAGAAATACAACAACATGAAGCTTGATGGAAAACCATTGCAAATTGAGCTTGTTGGAACCACTGTGCTACCTGCTCCTGATGTTATGCCTCACTTTCAAAATAGCATATTGGGAAAACCAAATAACTTCTTTGCATGTGGACAGGGAAGGGCCGAAGGTAGAGGTTTCCAGAATGGCATTTTAGGTGACTATCATCAAAGGGACCTTAGTTACAGGATTGGAGGGAAGGTCCATATTGGAAGGAGGGTGTCTTCTAGAGATCTTGATGATGATTTGGAGAGGTATAACCAACGTCCAAGAGGTGGTCCAACAGGTGGAGGTGGGGGAGGAGGCCGCAGAGAACCAAGGGGCCAAAACAAAAACAGAGGGTTATCCCTCAAAGATCTTGATGACGACTTGGAGCGGTATCGCATGGAGGCTATGCAACTAAAAAAGAAAATTCCAAACTGA 891 0.4893 MAAGMDMSLDDVIKRSAADSAARRRQRQPIWGPGPDRRIPSRLSAPMTPYPVSQNDLQVGRQMMQGSVIPGVGVVMGHGAGAGAEPDTETKLYVSNLDYGVSNEDIKLLFAEEGELKRYSIHYDKSGRSKGTAEVVFVRKSDALAAMKKYNNMKLDGKPLQIELVGTTVLPAPDVMPHFQNSILGKPNNFFACGQGRAEGRGFQNGILGDYHQRDLSYRIGGKVHIGRRVSSRDLDDDLERYNQRPRGGPTGGGGGGGRREPRGQNKNRGLSLKDLDDDLERYRMEAMQLKKKIPN 296
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90884g00001 296 Coils Coil 273 296 - -
Stsc90884g00001 296 CDD RRM_THOC4 90 164 - -
Stsc90884g00001 296 SUPERFAMILY RNA-binding domain, RBD 24 164 IPR035979 GO:0003676
Stsc90884g00001 296 Gene3D - 63 164 IPR012677 -
Stsc90884g00001 296 SMART rrm1_1 91 163 IPR000504 GO:0003723
Stsc90884g00001 296 MobiDBLite consensus disorder prediction 262 278 - -
Stsc90884g00001 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Stsc90884g00001 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
Stsc90884g00001 296 MobiDBLite consensus disorder prediction 231 278 - -
Stsc90884g00001 296 MobiDBLite consensus disorder prediction 16 46 - -
Stsc90884g00001 296 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 288 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90884g00001 Stsc-Chr90884 2123 4524 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90884g00001 92 165 Eukaryotic Initiation Factors Gene Family AT2G23350 39.189 9.37e-09 54.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90884g00001 K12881 - gmx:100785926 215.698