Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc90884g00001 | ATGGCCGCCGGCATGGATATGTCTCTCGATGACGTCATCAAGAGGTCCGCCGCCGATTCCGCTGCTCGCCGCCGCCAAAGGCAACCTATCTGGGGCCCCGGTCCCGACCGCCGCATCCCTAGTCGTCTCTCCGCCCCAATGACGCCCTACCCCGTCTCACAGAATGATTTGCAGGTGGGAAGGCAAATGATGCAAGGGAGTGTTATTCCTGGTGTTGGAGTGGTTATGGGTCACGGAGCTGGAGCTGGAGCTGAACCTGACACTGAAACCAAACTCTATGTTTCTAACTTGGATTATGGTGTTTCCAATGAAGATATTAAGCTTCTGTTTGCAGAAGAGGGCGAGTTAAAGAGATACTCCATCCATTATGACAAGAGTGGGAGATCAAAGGGGACAGCGGAAGTTGTCTTTGTGAGGAAGTCTGATGCTCTAGCAGCCATGAAGAAATACAACAACATGAAGCTTGATGGAAAACCATTGCAAATTGAGCTTGTTGGAACCACTGTGCTACCTGCTCCTGATGTTATGCCTCACTTTCAAAATAGCATATTGGGAAAACCAAATAACTTCTTTGCATGTGGACAGGGAAGGGCCGAAGGTAGAGGTTTCCAGAATGGCATTTTAGGTGACTATCATCAAAGGGACCTTAGTTACAGGATTGGAGGGAAGGTCCATATTGGAAGGAGGGTGTCTTCTAGAGATCTTGATGATGATTTGGAGAGGTATAACCAACGTCCAAGAGGTGGTCCAACAGGTGGAGGTGGGGGAGGAGGCCGCAGAGAACCAAGGGGCCAAAACAAAAACAGAGGGTTATCCCTCAAAGATCTTGATGACGACTTGGAGCGGTATCGCATGGAGGCTATGCAACTAAAAAAGAAAATTCCAAACTGA | 891 | 0.4893 | MAAGMDMSLDDVIKRSAADSAARRRQRQPIWGPGPDRRIPSRLSAPMTPYPVSQNDLQVGRQMMQGSVIPGVGVVMGHGAGAGAEPDTETKLYVSNLDYGVSNEDIKLLFAEEGELKRYSIHYDKSGRSKGTAEVVFVRKSDALAAMKKYNNMKLDGKPLQIELVGTTVLPAPDVMPHFQNSILGKPNNFFACGQGRAEGRGFQNGILGDYHQRDLSYRIGGKVHIGRRVSSRDLDDDLERYNQRPRGGPTGGGGGGGRREPRGQNKNRGLSLKDLDDDLERYRMEAMQLKKKIPN | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc90884g00001 | 296 | Coils | Coil | 273 | 296 | - | - | |
Stsc90884g00001 | 296 | CDD | RRM_THOC4 | 90 | 164 | - | - | |
Stsc90884g00001 | 296 | SUPERFAMILY | RNA-binding domain, RBD | 24 | 164 | IPR035979 | GO:0003676 | |
Stsc90884g00001 | 296 | Gene3D | - | 63 | 164 | IPR012677 | - | |
Stsc90884g00001 | 296 | SMART | rrm1_1 | 91 | 163 | IPR000504 | GO:0003723 | |
Stsc90884g00001 | 296 | MobiDBLite | consensus disorder prediction | 262 | 278 | - | - | |
Stsc90884g00001 | 296 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 92 | 160 | IPR000504 | GO:0003723 | |
Stsc90884g00001 | 296 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 90 | 167 | IPR000504 | GO:0003723 | |
Stsc90884g00001 | 296 | MobiDBLite | consensus disorder prediction | 231 | 278 | - | - | |
Stsc90884g00001 | 296 | MobiDBLite | consensus disorder prediction | 16 | 46 | - | - | |
Stsc90884g00001 | 296 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 5 | 288 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc90884g00001 | Stsc-Chr90884 | 2123 | 4524 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc90884g00001 | 92 | 165 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 39.189 | 9.37e-09 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc90884g00001 | K12881 | - | gmx:100785926 | 215.698 |