Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90881g00003 ATGGGGGAGACATTGGCATTGGCACCAGACATGCTAAAAGGAAATCAAATGGCTGCATCAGTTTTTGAAGTGATGGATAGAAGGACAGCAATAATTGGTGATGTGGGAGAAGAGTTGGATACAGTTGAAGGAACAGTTGAGCTAAAAAATATCCATTTCCGATACCCTTCAAGGCCAGATGTGATTATTTTTAATGATTTCAATATGAAAGTTCCTTCAGGGAAGACTCTTGCCTTGGTGGGGCACAGTGGTTCCGGGAAAAGCTCCGTCATCTCACTGATTCTCAGATTTTATGATCCAACTTCTGGAAGGGTGATGATTGATGGAAAAGACATAAGGAATCTTAACCTGAAATCTGTTAGGAAACACATGGGTTTTGTGCAACAAGAACCAGTTCTTTTTGCAACATCCATTTATGATAATATTCTTTATGGAAAGGAAGGAGCGTCTGATTCAGAAGTAGTTGAAGCAGCTAAGCTTGCAAATGCTCATAACTTCATTAGTGGCCTTCCTGAGGGCTACTCCACCAAAGTAGGGGAAAGAGGAGCTCAACTATCTGGTGGTCAGAGACAGAGGATAGCTATTGCGAGGGCCATTTTGAAGAATCCTGCAATCTTGTTGCTAGATGAAGCCACCAGCGCACTAGATGTGGAGTCAGAGCATGTGGTACAACAAGCTCTAGACAAATTGATGCACAACAGAACAACAATTGTTGTGGCTCATAGGCTATCCACTATAAGAAATGCATATCAAATCTCAGTTGTCCAAGATGGAAAAATAGCTGAGCAAGGGACTCATTCGACTCTCATACAGAACAAGAGTGGAGCATATTATAAATTAGTTAGCCTTCAACAACAACATCTACATTTACATGAGCAACAAAATTAG 888 0.411 MGETLALAPDMLKGNQMAASVFEVMDRRTAIIGDVGEELDTVEGTVELKNIHFRYPSRPDVIIFNDFNMKVPSGKTLALVGHSGSGKSSVISLILRFYDPTSGRVMIDGKDIRNLNLKSVRKHMGFVQQEPVLFATSIYDNILYGKEGASDSEVVEAAKLANAHNFISGLPEGYSTKVGERGAQLSGGQRQRIAIARAILKNPAILLLDEATSALDVESEHVVQQALDKLMHNRTTIVVAHRLSTIRNAYQISVVQDGKIAEQGTHSTLIQNKSGAYYKLVSLQQQHLHLHEQQN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90881g00003 295 Gene3D ABC transporter type 1, transmembrane domain 5 287 IPR036640 GO:0005524|GO:0016020
Stsc90881g00003 295 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524|GO:0016887
Stsc90881g00003 295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 282 IPR003439 GO:0005524
Stsc90881g00003 295 SMART AAA_5 73 259 IPR003593 GO:0016887
Stsc90881g00003 295 Gene3D - 36 285 IPR027417 -
Stsc90881g00003 295 CDD ABC_MTABC3_MDL1_MDL2 46 284 - -
Stsc90881g00003 295 FunFam ABC transporter B family member 4 36 292 - -
Stsc90881g00003 295 PANTHER ABC TRANSPORTER B FAMILY 12 283 IPR039421 -
Stsc90881g00003 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 284 IPR027417 -
Stsc90881g00003 295 Pfam ABC transporter 65 213 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90881g00003 Stsc-Chr90881 6060 7246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90881g00003 2 285 Calmodulin-binding Proteins AT2G36910 61.806 1.06e-117 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90881g00003 K05658 - gmx:100810688 469.159