Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90881g00002 ATGTCATCATCGGAGGCGGGCTACAAAACGCCCGAAGCAGAATACAACACCCCACCGGCGTTAATAGCATTGACGTTAGCCATCCTAGTGTTATGCTTCATGGCCTTCAGCATTGTGTACTTGTGCAAGTACTGCCTTGTAAGCATCATACACTCTTGGGCCTTCCACCGGAGTTTCTCTGGTTCATTGGTTCGTCCTTCATCAACAAATAGGTCTTCCTCTATAGGTCTTGATCCTTCCATGCTTCAAACGTTCCCAACCTTTGTGTATTCCTCCGTAAATGACCTCCACAACAAGAATAAGTATGGCCTAGAATGCGCCATTTGCTTGCTTGAATTCCAGGATGACAGCTTGATTCGCCTCTTGACTTATTGCTGCCATGTTTTCCACCAAGAATGCATTGACCTTTGGCTTTATTCCCACAAGACTTGCCCTGTTTGCCGCACGAACCTTGAGGAGCTTAAATCAGGGGATGACATTTTTCATGAAGAAGGAGAAGGAGAAATCAGTGGTGGTGGTGGCGACGTACGCATTGACATAATAACAGACAGGGCCGCGACGGAAGGTAGTGGGGATCATCAGGGCACTGGAGGAGGAGAAGATCGTACGTCGTGTAGTGGCGAACATGATCATAATAATGGTGTGCAGCAAGAACATAAGTTTGCAAGGTCACACTCAACGGGGCATTCCATTGTTTTTATTAGAGGAGAAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAAGAGAAGAAGAAGAAAAAGATGATAAATATACCTTGAGACTGCCGCAACATATTATAAGAGGGCGGCACCACTATTCTAAGAGTTGTACAAGTTTTCAAGAGATGCACATGACGACATCGACTAGACCATGTAGTAATTGTGGCTTTGTTGGATCTGTATCTGGCTGCTCTACCTCTCTCAGTTATACTCAGAAATCCTGCTGA 951 0.4595 MSSSEAGYKTPEAEYNTPPALIALTLAILVLCFMAFSIVYLCKYCLVSIIHSWAFHRSFSGSLVRPSSTNRSSSIGLDPSMLQTFPTFVYSSVNDLHNKNKYGLECAICLLEFQDDSLIRLLTYCCHVFHQECIDLWLYSHKTCPVCRTNLEELKSGDDIFHEEGEGEISGGGGDVRIDIITDRAATEGSGDHQGTGGGEDRTSCSGEHDHNNGVQQEHKFARSHSTGHSIVFIRGEGGGEEEGGGGGGREEEEKDDKYTLRLPQHIIRGRHHYSKSCTSFQEMHMTTSTRPCSNCGFVGSVSGCSTSLSYTQKSC 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90881g00002 316 SMART ring_2 106 147 IPR001841 -
Stsc90881g00002 316 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Stsc90881g00002 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 154 IPR013083 -
Stsc90881g00002 316 PANTHER RING FINGER DOMAIN-CONTAINING 14 152 - -
Stsc90881g00002 316 MobiDBLite consensus disorder prediction 203 225 - -
Stsc90881g00002 316 MobiDBLite consensus disorder prediction 244 258 - -
Stsc90881g00002 316 Pfam Ring finger domain 105 148 IPR001841 -
Stsc90881g00002 316 FunFam E3 ubiquitin-protein ligase ATL6 65 154 - -
Stsc90881g00002 316 SUPERFAMILY RING/U-box 90 154 - -
Stsc90881g00002 316 MobiDBLite consensus disorder prediction 186 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90881g00002 Stsc-Chr90881 3517 4467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90881g00002 19 277 Rapid Response to Elicitors AT2G35000 30.418 8.22e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90881g00002 - - adu:107479180 472.626