Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90880g00004 ATGGCTCCTTCTACACTCTCTCTTGTTATGGTGCAACACTCTTCCTCGTCTTCATCATCTTCATCAGGTGGTTGTAGTAAGAGAAAACAGAATGTGCAGCTGAGAAATCCTTTTGCTTCAGTTAGCATGGGAGAGAAGAAGCCATTTGATTTCTTACGCACTTTATTTGAGGGCGTTATCGCTGGAGGTACCGCTGGAGTCGTAGTTGAAACGGCTTTATACCCAATTGACACTATAAAAACACGTTTGCAGGCTGCTCGGGGAGGAGAAAAACTAGTACTTAAGGGACTTTATTCTGGATTGGCAGGGAACCTTGCTGGTGTCTTACCGGCATCGGCTTTATTCGTTGGAGTTTATGAACCTATAAAGCAGAAACTGTTGAGGATGTTTCCTGAAAATCTGAGTGCTTTTGCTCATCTGACTGCAGGTGCCATAGGGGGCATTGCCGCTTCACTGATTCGTGTTCCAACAGAGGTTGTTAAGCAACGGATGCAAACTGGACAGTTTACTTCAGCCGCTGGTGCTGTCCGCTTCATTTCTGCTAAGGAAGGTTTCAAAGGACTTTATGCTGGGTATGGATCTTTTTTATTGCGGGATTTGCCTTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTAGGATGGGTTATATGCTTGCGGCCCGAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCATTTGCAGGTGCACTAACTGGAGCTATAACAACTCCACTTGATGTCATCAAGACAAGATTAATGGTTCAGGGATCTGCAAACCAATATAATGGAATCGTAGATTGTGTTCAAACAATTATCAAGGAAGAAGGACCTAGTGCGCTTTTGAAGGGTATTGGGCCTCGCGTACTATGGATAGGAATCGGTGGTTCGATATTCTTTGGTGTTCTTGAGGGTACAAAACGTTTTCTGGCTGAGAGGCGTCCTACACCTTCAGAGTCAGAAAAGGTTAAATAA 981 0.4363 MAPSTLSLVMVQHSSSSSSSSSGGCSKRKQNVQLRNPFASVSMGEKKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLVLKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRMFPENLSAFAHLTAGAIGGIAASLIRVPTEVVKQRMQTGQFTSAAGAVRFISAKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQIRMGYMLAARRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYNGIVDCVQTIIKEEGPSALLKGIGPRVLWIGIGGSIFFGVLEGTKRFLAERRPTPSESEKVK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90880g00004 326 SUPERFAMILY Mitochondrial carrier 56 306 IPR023395 -
Stsc90880g00004 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 53 125 IPR018108 -
Stsc90880g00004 326 Pfam Mitochondrial carrier protein 134 216 IPR018108 -
Stsc90880g00004 326 Pfam Mitochondrial carrier protein 229 314 IPR018108 -
Stsc90880g00004 326 Pfam Mitochondrial carrier protein 55 89 IPR018108 -
Stsc90880g00004 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 134 216 IPR018108 -
Stsc90880g00004 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 229 311 IPR018108 -
Stsc90880g00004 326 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 57 324 - -
Stsc90880g00004 326 Gene3D Mitochondrial carrier domain 53 323 IPR023395 -
Stsc90880g00004 326 PRINTS Mitochondrial carrier protein signature 71 85 IPR002067 GO:0055085
Stsc90880g00004 326 PRINTS Mitochondrial carrier protein signature 58 71 IPR002067 GO:0055085
Stsc90880g00004 326 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085
Stsc90880g00004 326 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Stsc90880g00004 326 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 31 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90880g00004 Stsc-Chr90880 47653 52903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90880g00004 132 324 Chloroplast and Mitochondria Gene Families AT1G07030 29.293 1.67e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90880g00004 K15111 - gmx:100811130 521.161