Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90880g00002 ATGTCAACAACAACTTCACAAACTATGCTGGTTAATAACCAAAGTTTGTTTGGGGATCATCAGAATAATATGGAGGCTACAGAAATGGGGTTTCTTCCTCTTCTACCAACAAGCATGATGATATTCCCTGCTTCTCCTCCCATGGGATGCAATCATCATCATCATCAACAACAACAACAACCCTGCTACTCCTTATTGAAACCCTTCTCTTCAATACTATCTCCAAATTCAATTGCATCTGATCAAGCTGATTCAACTTCAAACCTAACCGCTGAAACCCTACTGGCAACTGATGCACAGCATAAATCAACATTAGACCTCACCTCTACACCTTTTCTTGGACCTCATCAATTCTTATCCTTGAACAGATCCACTATCAACAATAATCCATGGGCAACGGGAGAAGTGCCTGATTGCTTCAGCAGCAAAAGAAATGTAATTGATAATCATCATCATCATCATCATCATCATAATCATGTGGGGGTTTCTACCATTAAGATGAAGAAAATCAAGGGAAGAAGAAAGGTTAGAGAACCTAGGTTTTGCTTCAAGACTCTGAGCGATGTCGATGTTTTGGACGATGGCTACAAATGGAGGAAGTATGGCCAAAAAGTGGTCAAGAACACGCAACACCCCAGAAGCTACTACCGTTGCACACAAGACAATTGTCGAGTAAAGAAACGAGTGGAGCGGTTAGCTGATGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCACACTCCATCCAATGATCTTGAAGACTCTCAATCTCCTTCTCAACTTACCAACTTCTTCTGGTAG 810 0.4111 MSTTTSQTMLVNNQSLFGDHQNNMEATEMGFLPLLPTSMMIFPASPPMGCNHHHHQQQQQPCYSLLKPFSSILSPNSIASDQADSTSNLTAETLLATDAQHKSTLDLTSTPFLGPHQFLSLNRSTINNNPWATGEVPDCFSSKRNVIDNHHHHHHHHNHVGVSTIKMKKIKGRRKVREPRFCFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLADDPRMVITTYEGRHAHTPSNDLEDSQSPSQLTNFFW 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90880g00002 269 SMART WRKY_cls 192 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90880g00002 269 FunFam WRKY transcription factor 57 178 252 - -
Stsc90880g00002 269 SUPERFAMILY WRKY DNA-binding domain 185 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90880g00002 269 ProSiteProfiles WRKY domain profile. 187 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90880g00002 269 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 52 253 IPR044810 GO:0003700
Stsc90880g00002 269 Pfam WRKY DNA -binding domain 193 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90880g00002 269 Gene3D WRKY domain 179 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90880g00002 Stsc-Chr90880 17097 20004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90880g00002 75 269 WRKY Transcription Factor Family AT4G39410 51.489 1.02e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90880g00002 WRKY 8.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90880g00002 - - adu:107480316 443.351