Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90880g00001 ATGGAAACAATAGGGAGAATCAAGCACAAGAATCTGGTTCCCCTGCTCGGTTACTGCAAGGTTGGAGAGGAGAGGCTATTGGTTTATGAATACATGAAGTATGGAAGCTTAGATATTCTTCATGACCAGAAGAAAGCAGGGATCAAGCTGAATTGGGCCGCGAGGAAGAAGATCGCAGTTGGAGCTGCCAGAGGATTGGCTTTTCTTCACCATGCTTGTAACCCGAACATCATTCACAGAGACATGAAATCAAGCAATGTGTTGCTTGATGAAAATTTAGAAGCCAGAGTCGCTGATTTTGGAATGGCTAGGCTTATGAGTAGTGTGGATACACATTTGAGTGTGAGCACGCTAGCCGGAACACCGGGCTATGTTCCGCCGGAATACTATCACAGCTTTCGCTGTTCTACTCATGGGGATGTGTATAGCTTTGGCGTGGTTCTCTTGGAACTTCTAACTGGGAAGAAAGCTACGGATTCGTCCGATTTCGGTGATGACAACCTTGTTGGATGGGTTAAACAGCATGCCAAACTCAAGAAAAGTGATGTGTTTGATCCTGAACTCAAGAAAGAGGATCCTTGCCCTGAACTTGAGCTAGTGCAGTACTTAAACGTTGCATTTGCTTGCTTGGATTATCGGCCGCGGCGGCGTCCCAATATGATTCAAGTCTTGGTTATGTTTAAAGAAATCCAAGCAGGGTCAGGTATGGATTCCCAGTCTACTATAGGCACCGAAGATGTATGCTTTGGTGCAGTTGAAATGGTAGATATGAGCATAAAAGAAGCTCCAGATTCCTGA 798 0.4524 METIGRIKHKNLVPLLGYCKVGEERLLVYEYMKYGSLDILHDQKKAGIKLNWAARKKIAVGAARGLAFLHHACNPNIIHRDMKSSNVLLDENLEARVADFGMARLMSSVDTHLSVSTLAGTPGYVPPEYYHSFRCSTHGDVYSFGVVLLELLTGKKATDSSDFGDDNLVGWVKQHAKLKKSDVFDPELKKEDPCPELELVQYLNVAFACLDYRPRRRPNMIQVLVMFKEIQAGSGMDSQSTIGTEDVCFGAVEMVDMSIKEAPDS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90880g00001 265 PIRSF ILK 1 240 - -
Stsc90880g00001 265 Gene3D Transferase(Phosphotransferase) domain 1 34 232 - -
Stsc90880g00001 265 FunFam Brassinosteroid LRR receptor kinase 32 232 - -
Stsc90880g00001 265 SMART serkin_6 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90880g00001 265 CDD STKc_IRAK 1 230 - -
Stsc90880g00001 265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Stsc90880g00001 265 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90880g00001 265 Pfam Protein kinase domain 3 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90880g00001 265 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
Stsc90880g00001 265 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 232 - -
Stsc90880g00001 265 SUPERFAMILY Protein kinase-like (PK-like) 3 227 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90880g00001 Stsc-Chr90880 11652 12449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90880g00001 1 264 Receptor kinase-like Gene Family AT4G39400 79.699 1.01e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Stsc90880g00001 Pkinase 8.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90880g00001 K13415 - twl:120001510 448.358