Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90879g00004 ATGGCATCCCCGGTTGGGGAAGCCTCTTCAAGTTCATCAATGCCACGATCATACACCTATAAGGTCTTCTTGAGTTTCAGCGGAAAAGACACTTACGGAGGATTCACTAGCCATCTCTATGCGGCGCTCGTCAACAGGGGAATCACAACCTACATCGATCGCAATTACCTTCAGAAAGGCGATGTTATTTCCGATGAACTCTTCAAGGCAATTGAGGAATCTATGTTTGCTGTGGTAGTTCTGTCGCCAAACTATGCATCCTCTACATGGTGCTTGGATGAGCTCCAGAAGATTGTTGAGTGCAAGAGCAACCTGGATATTGTGGCAGTGTTCTACGATGTGAAGCCTGGTGATGTGAGGCATCAAATAGGAGTCTTTGAAGAAGCTTTCAAGATGCATGAAGATAGATACGGAAAAGAAAGTGAGAGGGTTACAGGATGGAGAAAGTTCTTAAAACAAATTGCCAGTTATTCTAATTGGGTCCGTCAAGATTTCGAGAACGATGCCATACTCGTGGAACTCATTGCTCAACATATACATAAGAGATTGATTGAGAAATCACCTCCGTCAGATGATCTCGTTGGTGTTGCTGCAAAGTTGGAAGAAGTTGATGGACACATTAGTATTGGGGTGAATGATGTTCGCTTCATTGGCATATGGGGAATAGGCGGTGTTGGTAAGACAACTATTGCTAGAAGAGTCTTTAAAACCATTCAAAGTGAATTTGAAGCTAGTTGCTTTCTTTCCAATGTAAGAGTGAGATGTGAGAATGGTGGTATTGTTCAACTACAGAAGCAACTTCTTGATCGTATGAATTCAAATACTACTTTCTACGATGAGTTCGAGGGAAAAGATTTAATTCGTGACTCTGTGTGCAATAAGAAGGTCCTTCTTGTTCTCGATGATGTAGATGATGTAGGCCAATTGGATAATTTGGCTGGTGCACAAGACTGGTTCGGTCCTGGAAGCAGAATAATAATCACATCTAGAGATAGACATGTACTAGATGTGCATGGAGTGAATAGAATTTGTAAGGTTGAAGAGTTAGAGCAAAATGAAGCACATGAACTCTTTTGTTTGAAAGCTTTTAAAAAGCCAAAACCTGAAGAAGGGTATATGGATTTGTCCAAAGGAGTGGTTCAGAATTGTGATGGTCTTCCATTGGCACTTGTAGTATTGGGTTCCCATCTTTGTCGACAACCCTTTGATGTTTGGCACAGTGCTATTGAAAAATTGAAGAGCTCTATGCATGACAAAATTTTTAATATATTGAAAATAAGTTATGATGGTTTAGATCCTTCACAACAGGATATCTTTCTACATATTGCTTGCTTTTTCAAAGGATGTAACACAGATTATGCAACACATACATTGAGAATGTGTGGTTATCATGTTGGAATTGACATGGCTACTTTAATGGATAAATCTTTGCTCACAATAATAAATGATGGGCATGTTTATATGTTGGACATGCATGATCTACTTGAAGAAATGGGCAAACAGATTGTAATTAAAGAATCTCTCGATGATCCTAGCAAGCGTAGTAGGCGGTGGTCTTATAAGGATATTGATCTTGTACCTATACAAAACAAGGGAATTGATGCAACTTATCAGCACAATATGTCGCTTAAAGTGTATTGGTCGAAGAAACTCATCATTTTAGATTGCGTGGAAGCTTGCATTCACGGCAATATTCCTTGTTCAGTAAAAGTTTTGCACTGGACAAATTGTCCAATGGAAACTCTACCCCTTATAGATCAACACAAAGAACTTGTTGAAATTTATATTCCTTGGAGCAGCATTGTACATGTCTGGCATGGAAAGAAGTTTCTAGATAATTTAGAGCAGTTGGATCTGTCACGGTGTCAGTTTTTGGAGCAAACGCCAGACATTTCTGGGGCTCCGAATCTTAAAATAGTTAATCTTGAGGAATGTCAGAAGCTGAGTTATATTCACCCTTCTTTTGCACACCACAAAAGCCTTGTTGAATTGAATTTAGAGGGATGTGAGAGTCTTGAAACACTTGCAGATAAAATGGAAATGAGTTCACTCAAGAAACTAAATCTATGCAAGTGCACTAGTTTGAGAAGACTGCCAGAATTTGGGGAATGCATGAATCAGTTATCCGTTCTTAGTTTAAGTGATACAAAGATAGAAGAACTGCCCAGGACATTTGGAAATTTGGTTGGCCTGTCTTATTTAGACTTGAGCGAATTCAACTTTGATGGGGTCCCAATAAATATTCTTGAATTTCCCATGCTTACATGTCTGATTCTAAGAAGCTGTTATAGTCTGAAGACTTTGCCAAACCTTCCATCGAGGCTAAGAGCATTAGACGCATCAGATTGTATGAATTTGCATTCATGGAATAGTTCAAATGTTATATCAAAGGCATGTTGTGGCTTTGCAGAATCAGCTAAGCAAGATGGTGAAGACCTCTTGCAAATGGTGATCCCAGGGAAAGAAATTCCAGCATGGTTTGAACATCAGGAAGAAGGTGACGCTGTATCAGTACCATTCCCGCATAATTGCCCTTCAACTGAAACCCTCTCACTTGCTCTCTGTTTTCTATTAGACAGTGAAAGTAGACTTACGGTACAAGGACAGCCTGTGGTGAGCTGCAACGGTAAAGAACTTGTCAACCAGATTTTATTTGAGGTGTCTTTCAGTTTCCTTTCTCGCTGTCATCTTTTGATTGTCTGCTTGAACAGTTACTATTTTAGTAACCTGTTATGTGAACCTAATTGCTTCCAAATGTCATTCATGGGTACTAATTTCCGTAGTTATAATGACTTAGTAAAGAGATGCGGAGCCCGTTGGGTGTGTAAGCAAGACACTTGCAGAAGCTCCAACCCATAG 2859 0.3966 MASPVGEASSSSSMPRSYTYKVFLSFSGKDTYGGFTSHLYAALVNRGITTYIDRNYLQKGDVISDELFKAIEESMFAVVVLSPNYASSTWCLDELQKIVECKSNLDIVAVFYDVKPGDVRHQIGVFEEAFKMHEDRYGKESERVTGWRKFLKQIASYSNWVRQDFENDAILVELIAQHIHKRLIEKSPPSDDLVGVAAKLEEVDGHISIGVNDVRFIGIWGIGGVGKTTIARRVFKTIQSEFEASCFLSNVRVRCENGGIVQLQKQLLDRMNSNTTFYDEFEGKDLIRDSVCNKKVLLVLDDVDDVGQLDNLAGAQDWFGPGSRIIITSRDRHVLDVHGVNRICKVEELEQNEAHELFCLKAFKKPKPEEGYMDLSKGVVQNCDGLPLALVVLGSHLCRQPFDVWHSAIEKLKSSMHDKIFNILKISYDGLDPSQQDIFLHIACFFKGCNTDYATHTLRMCGYHVGIDMATLMDKSLLTIINDGHVYMLDMHDLLEEMGKQIVIKESLDDPSKRSRRWSYKDIDLVPIQNKGIDATYQHNMSLKVYWSKKLIILDCVEACIHGNIPCSVKVLHWTNCPMETLPLIDQHKELVEIYIPWSSIVHVWHGKKFLDNLEQLDLSRCQFLEQTPDISGAPNLKIVNLEECQKLSYIHPSFAHHKSLVELNLEGCESLETLADKMEMSSLKKLNLCKCTSLRRLPEFGECMNQLSVLSLSDTKIEELPRTFGNLVGLSYLDLSEFNFDGVPINILEFPMLTCLILRSCYSLKTLPNLPSRLRALDASDCMNLHSWNSSNVISKACCGFAESAKQDGEDLLQMVIPGKEIPAWFEHQEEGDAVSVPFPHNCPSTETLSLALCFLLDSESRLTVQGQPVVSCNGKELVNQILFEVSFSFLSRCHLLIVCLNSYYFSNLLCEPNCFQMSFMGTNFRSYNDLVKRCGARWVCKQDTCRSSNP 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90879g00004 952 Gene3D Ribonuclease Inhibitor 680 800 IPR032675 -
Stsc90879g00004 952 Pfam NB-ARC domain 201 429 IPR002182 GO:0043531
Stsc90879g00004 952 SMART till_3 19 157 IPR000157 GO:0007165
Stsc90879g00004 952 Gene3D Ribonuclease Inhibitor 554 679 IPR032675 -
Stsc90879g00004 952 ProSiteProfiles TIR domain profile. 18 183 IPR000157 GO:0007165
Stsc90879g00004 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 700 IPR044974 GO:0006952
Stsc90879g00004 952 Pfam C-JID domain 818 945 IPR045344 -
Stsc90879g00004 952 Pfam TIR domain 20 190 IPR000157 GO:0007165
Stsc90879g00004 952 PRINTS Disease resistance protein signature 383 397 - -
Stsc90879g00004 952 PRINTS Disease resistance protein signature 216 231 - -
Stsc90879g00004 952 PRINTS Disease resistance protein signature 290 304 - -
Stsc90879g00004 952 PRINTS Disease resistance protein signature 609 625 - -
Stsc90879g00004 952 Gene3D - 182 344 IPR027417 -
Stsc90879g00004 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 442 IPR027417 -
Stsc90879g00004 952 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 185 - -
Stsc90879g00004 952 SUPERFAMILY L domain-like 517 941 - -
Stsc90879g00004 952 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Stsc90879g00004 952 Gene3D - 12 181 IPR035897 -
Stsc90879g00004 952 Gene3D - 348 432 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90879g00004 Stsc-Chr90879 34312 40113 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90879g00004 17 778 WRKY Transcription Factor Family AT4G12020 28.660 4.76e-76 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90879g00004 - - adu:107485884 971.459