Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90879g00002 ATGTCTTCCAGCTCCTCTTGTGCTTCAGTCCCACCACCTCCACCAAGAGCATGCACCTATCACGTGTTCTTGAGTTTCAGGGGTGAAGATACTCGCGGACGATTTACTAGCCATCTCTATGAGGCCCTCAACAGGAAGGGAATCACTACGTACAGAGATGATAACAACCTTCGCAAAGGCGATGTTATTTCAGATGAACTCCTGAAAGCAATTGAAGAGTCTATGTTTGCTGTCATAGTTCTCTCGCCAAACTATGCTTCATCCACATGGTGCTTGGATGAGCTCTGCAAGATCCTTGACTGCAAGAATAAGCTGGGGTTACATTTGGAAGTAGTGTTCTACGGTGTGAAGCCTTGTGATGTGAGGCATCAAATAGGAGCCTTTCAGGAAGCTTTCAAGAAACACCAACAGAGACATGACAGTCACAAGGTTAAGAGATGGAAAGATGCGTTATCTCAAGTTGCTGACTATTCTGGTTGGAGCTCCCAAAATCGAGACGAGGCAGTGCTTGTGGAAAAAATTGCTCAACATATCCATGAAATGTTGATTCCGAAGTTGCCATCTTCAATGAAGGAGCTTGTAGGTATTGAATCAAGAGTGAAGCAAGTGATTAGCCACATGGGCCTTGGTTTAAATGATGTTCGCTATATAGGCATCTGGGGAATGGGCGGCATGGGTAAGACCACTATTGCTAGAGCAGTCTTTGAAGCCATTCGAGATAGATTTGAAGTTACCTGCTTTCTTGCTGATGTAAGGGAGCACTGTGAGAAAAATGATATAATCCACATACAAAAACAACTTCTCGATCAAATGAATATTAGTTCGAAAGCTGTTTATAGCGAGTATGATGGGAGAATAATAATTCAAAACTCTTTACGTCTCAAAAAGGTTCTTCTTGTTCTTGATGATGTAAATCATGAAAAACAATTAGAGAATTTGGCTGGAGGGAAGGATGGGTTTGGTTCCGGAAGCAGAATAATAATTACAACTAGAGACGTAGAAGTGCTAAAGGAACAAGAGATGCATGCAACTTACAAGGTTGAAGGTTTAGTGGAAACTGAAGCCTTTAACCTCTTTTCTTTAAAAGCTTTTAAGCTGCCAAAACCTACGGAAGAGTTTTTGGATTTGTCCAAAGAAGTGGTTAAATACAGTGGTGGTCTTCCATTGGCCCTTATAGTATTGGGTATCCATCTTAGAGGTAGATCTATTGCTGTTTGGCATAGTGCTATTGAGAAAATAAAGAATTCTTCCAATGCTAAAATTATTGATGTATTGAAAATAAGCTATGATGGTTTAGATTCTGAGGAAAAGAATATTTTTCTAGATATTGCATGTTTCTTCAAAGGATGCGGGAAGGATTATGCAACAAAGATATTAGAAGAATGTGGTCATCATGCTGAAATTGGTATTGATGTTTTGATTAATAAATCGTTGGTCACAGTAGAGCAAGATCGTGATGGGAAGAACATTCTAGGGATGCATGATCTGCTTGAAGAAATGGGCAAACAAATTGTAATTCAAGAATCTCTGAATGATGCCAGCAAGCGTAGCAGATTATGGTGTTTCGAGGATGTTGATTCTGTACTTAATCAAAAGAAGGAAACTGAAGCCACCCATAGCATCGTTCTACACAATATGCAGAACTTTAAGACTGAAGTGCGTTGGAAGCATTTAGCTTTCTCAAATATAGGCCAACTAAAACTCCTCATTTTAGGTCTAGTGAATGCTCCCATTCTCAGCAATATTCCTTGTTCATTAAGAGTTTTGCTTTGGAAATATTGTCCATTGAAGACTCTGTCCCTTACAGATCAACGCTATGAACTTGTTGAAATTGATCTGTCTAATAGCCAAATTGCACAGTTATGGGATGGAACTAAGTTTCTAGAAAATTTAAAGCACCTGGATCTGTCATTTTGCACCAAGCTGAAGCAAACACCAGACGTTTCTGGGGCTCCCAATCTCAAAACTCTTAATCTTGAGGAATGTGAGAATCTGAATTATATTCACCCTTCTCTGGCACACCACAAAAGCCTTGTTGAATTGAATTTAAGGTACTGTGACCGTCTTCAAATATTTGCAGATAAATTGGAGATGAGTTCCCTGGAGAAACTAGATCTACACGGTTGCACTAGTTTGAGAAAACTGCCAGAATTTGGAGAATGCATGACAAAGTTATCTATTCTTTGTTTGGGTGATACATACATAAAAGAGCTACCCAAGACGTTTGAAAATTTGGTTGGCCTATCTGAATTATACTTAAGTTCGTTGGAGTATACTGATTTTCCAGTATCACTTAGGCGATTTGTTGGCCTCAAGAAGTTGAGGTTAGGTGGATGCCGCATGCTTTATCTTCCATACTCCATTCGTGGGTTAGAGTCCCTTACAGTTTCGCATTGTTCTGACATTCCAAATATCCATGAATGCTTTGTTAGCTTAGCTTGGTTGACAGATTTGGATATGTCATCTAACAGCTTTGTAAAGGTTCCAATAAGTAGTCATGAACTTCCCAGGCTTACACGTCTTAAGCTAAATCGTTGCAGAAATCTTCAAGTTTTGCCGGAGCTTCCATCAAGACTAAGAGAATTACAAGCAACAAATTGCAAATCATTGCATTTATCCGAAGATTCAAATGCCATATCAAAGGCATGTTGTGTCTTTGCAGAATCAGCTACCCAAGATGGTGAAGAAGAAGAAGGCTTGTTGCAAATGTTGATCTCAGGGAAAGAAATTCCAGCATGGTTTGTCCATCAAAGAGAAAAGGACACTATATTAGTGCCGTTACTACGTAATTGTCCTTCAACTGAAATCATGGCACTTGCTCTCTGTTTCATGCTAGAAAGTGATACCCACTATGACATACAACCTAAGGTGACCAGCAACGGGAAAGAATTCATCAACAAGAGTCTATTTCAGATGAAGTTGGATAAATATTCTCAGCATTTGTTCATTGTCTGCTTGACTGGTAACCATATTAGTAACCTGTTAGGCCAATACAATCACTTCCGTATGGTAATTCCTTCCAGTTATGGTGCTGGTACTGTCAAAGTAAAGAGATCTGGAGCACGTTGGGTGTGTAAGAAAGACATTCAAGATTTCAAGAAATGA 3105 0.3948 MSSSSSCASVPPPPPRACTYHVFLSFRGEDTRGRFTSHLYEALNRKGITTYRDDNNLRKGDVISDELLKAIEESMFAVIVLSPNYASSTWCLDELCKILDCKNKLGLHLEVVFYGVKPCDVRHQIGAFQEAFKKHQQRHDSHKVKRWKDALSQVADYSGWSSQNRDEAVLVEKIAQHIHEMLIPKLPSSMKELVGIESRVKQVISHMGLGLNDVRYIGIWGMGGMGKTTIARAVFEAIRDRFEVTCFLADVREHCEKNDIIHIQKQLLDQMNISSKAVYSEYDGRIIIQNSLRLKKVLLVLDDVNHEKQLENLAGGKDGFGSGSRIIITTRDVEVLKEQEMHATYKVEGLVETEAFNLFSLKAFKLPKPTEEFLDLSKEVVKYSGGLPLALIVLGIHLRGRSIAVWHSAIEKIKNSSNAKIIDVLKISYDGLDSEEKNIFLDIACFFKGCGKDYATKILEECGHHAEIGIDVLINKSLVTVEQDRDGKNILGMHDLLEEMGKQIVIQESLNDASKRSRLWCFEDVDSVLNQKKETEATHSIVLHNMQNFKTEVRWKHLAFSNIGQLKLLILGLVNAPILSNIPCSLRVLLWKYCPLKTLSLTDQRYELVEIDLSNSQIAQLWDGTKFLENLKHLDLSFCTKLKQTPDVSGAPNLKTLNLEECENLNYIHPSLAHHKSLVELNLRYCDRLQIFADKLEMSSLEKLDLHGCTSLRKLPEFGECMTKLSILCLGDTYIKELPKTFENLVGLSELYLSSLEYTDFPVSLRRFVGLKKLRLGGCRMLYLPYSIRGLESLTVSHCSDIPNIHECFVSLAWLTDLDMSSNSFVKVPISSHELPRLTRLKLNRCRNLQVLPELPSRLRELQATNCKSLHLSEDSNAISKACCVFAESATQDGEEEEGLLQMLISGKEIPAWFVHQREKDTILVPLLRNCPSTEIMALALCFMLESDTHYDIQPKVTSNGKEFINKSLFQMKLDKYSQHLFIVCLTGNHISNLLGQYNHFRMVIPSSYGAGTVKVKRSGARWVCKKDIQDFKK 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90879g00002 1034 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 160 IPR035897 -
Stsc90879g00002 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 443 IPR027417 -
Stsc90879g00002 1034 Gene3D Ribonuclease Inhibitor 491 696 IPR032675 -
Stsc90879g00002 1034 Pfam C-JID domain 906 1028 IPR045344 -
Stsc90879g00002 1034 Gene3D Ribonuclease Inhibitor 697 881 IPR032675 -
Stsc90879g00002 1034 PRINTS Disease resistance protein signature 384 398 - -
Stsc90879g00002 1034 PRINTS Disease resistance protein signature 291 305 - -
Stsc90879g00002 1034 PRINTS Disease resistance protein signature 216 231 - -
Stsc90879g00002 1034 PRINTS Disease resistance protein signature 626 642 - -
Stsc90879g00002 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 717 IPR044974 GO:0006952
Stsc90879g00002 1034 Gene3D - 350 433 IPR042197 -
Stsc90879g00002 1034 Pfam NB-ARC domain 199 423 IPR002182 GO:0043531
Stsc90879g00002 1034 SUPERFAMILY L domain-like 560 873 - -
Stsc90879g00002 1034 Gene3D - 17 181 IPR035897 -
Stsc90879g00002 1034 ProSiteProfiles TIR domain profile. 18 182 IPR000157 GO:0007165
Stsc90879g00002 1034 Pfam TIR domain 20 194 IPR000157 GO:0007165
Stsc90879g00002 1034 SUPERFAMILY "Winged helix" DNA-binding domain 420 529 IPR036390 -
Stsc90879g00002 1034 SMART till_3 19 157 IPR000157 GO:0007165
Stsc90879g00002 1034 Gene3D - 182 346 IPR027417 -
Stsc90879g00002 1034 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90879g00002 Stsc-Chr90879 7351 12240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90879g00002 13 852 WRKY Transcription Factor Family AT4G12020 29.215 3.42e-86 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90879g00002 - - adu:107485814 1216.83