Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90878g00019 ATGGCTGTCAAACTCACCGACTCGGCGATTATGCAGATGTGCGAAGATTCAAGTGCGGCTGAGACTCTGAAGCCGGTTTTGCAAGTCATGGACTTGAAGCATGTGCAGTCGAATCAGTGCAATACCGAGAGGTATCGTTTGGTTCTCTCTGATGGCACCCATTTCCAGCAAGGCATGCTCGCCACGCAGAAGAACGATTTGATCCATTCTGGCAGGTTGCAGAAAGGTTCTATCATCCTTCTCCATCAGTACACATGCAGCATTGTACAGGGCCGAACGATCATTATTATCATTGATCTAGATATTCTGATGGAAACATGTGAGACTCTTGGAAAACCGGTCAATTTTGCGAAAACCGCTCCGTCGCAGTCTGCAACTGCAACTGATCAATCAGGAACCACCGCTGGGCATAATGTGCTTGGTCCATCTCCTGATCCCCCAAAAGTAAATCAACCTGCTAGTAGTGTTGGTTCTGGTAGTTTTGACTCGGGGAGATTCGGTGCATCAAATGCCCCTCCTGCTTATCCTAAAGCAGAGCCTAGAGCCATGGGACCTAGTTCTGACTTGGCTAGTAATGGTTCATTAAATGTTCCTTTTACTTATCCTAAATCAGAGCCTGGAGCTACATTACCTAGATCAGGACAGCCTGCTGGGTCATATGGTGATCAGAATGCGGGTTATCGCAATGCCCAATCTGAGGTATCAAGGCCCGTTCAAAATTCTTATGCCCGTCCACCTCAGCCCATGTATCGACAGCCATCTCCAATGTACAATAACAGAGGCCCTACAACAAGAAATGAAGCTCACCTTAGGATCGTTCCAATAGCTGCATTGAATCCATATCAGGGTAACTGGACAATCAAAGCTAGAGTAACAGCTAAGGGAGATCTCAGGCACTATAGTAATGCCCGAGGTGATGGGAAGGTTTTTTCTTTTGATCTTCTTGATGCTGACGGTGGAGAAATCAAGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTTTACAATATAATTGAAGCTGGTAATGTCTATCTGGTTTCCAGGGGAAGTATAAAGCCAGCAGTGAAGAGCTTCAATCACCTTCGTAATGATCAGGAACTGACCCTTGATATGACCACCACTATACAACCAACCCACGATGATATGTCAATTCCACAGCAAACATTTGACTTTCGTCAAATTATTGATGTTGAATCTGTTGATAATAATACTATCTTAGATGTGATTGGTGTGGTGTCTTCTATTAGTCCTACTGCTTCAATTATGAGGAAAAATGGCACTGAAACTCAAAAGAGAAGCCTCCAGTTGAAAGACATGTCTGGCCGAACTCGTAAGCTGAGGGAATGGTTTGACAAGGAGGGGAGGAACATTCCTACTATTTCTCTTTCCAAAGAAGCATCTAATTTTGCCAAGTCTGATGTGCGGAAGACCATATCCCAGATTAAAGATGAGAAATTAGGGACATCTGAGAAGCCTGATTGGATATCTGTTTGTGCAAGTGTTTCATACATGAAGGTTGATAATTTCTGCTACACAGCTTGCCCTATCTTGATAGGGGACAGGCAATGCAACAAAAAGGTGACTAATAATGGAGATGGGAGATGGCGATGTGACAGGTGTGATCAGACTGTTGATGCTTGTGATTATAGGTACCTTCTGCAATTCCAGATTCAGGATCACACCGGCTTGACTTGGGTTACTGCTTTTCAGGAGAGTGGTGCGGAGATCATGGGTATGTCTGCTAAAGATTTGTATGACATTAAATTTGAGAAAATGGATGATGAACAATTTGGAGAAATCATGCGTAAGGTCCTCTTTAGTAAGTATATTTTCAAGTTGAAAGTAAAGGAGGAAACATACAGTGATGAGCAGCGTGTCAAGTCGACAGTAGTAAAAGCAGAGAAGGTAAACTTTCCATCTGAATCTAAATATCTTCTAGATATGATTGATAAGATTAAGTCTGAGAATGGAGAAGGTACCAATCCTAGCTCCATACCTAATTTTGCCGGACCGGTGAGCTCTGGAACTGGACAAGCTATGCCACCATCGGTTTCCAATCCTGTGATGAGCAACAGTAATTCCAGTATTGATCATGGAAACCAATATAGCAGCTCTTTTGCTGCTTCAACTGGTGCTCCTGCTTCATATGTGTCGTGTAGCATCTGTGGTGGCTCTGGTCACAGCTCTGCACAATGCCCTAATAATATGATGAATATGCCTGCTCAGTCGGCCGCAAGAGGTGGTGGATTCACAAGCAGGGCGCCTGCTGGATCAGGAGCTGCTGTCTCTGGTGAATGCTTTAAATGCCATCAACCTGGTCATTGGGCAAGAGATTGCCCTGCTTACAGTGCAGCACCACCAGCTTATGGAAGCTCTAACGGAATGCAAGGTAGATATGGGATTGCTCAAAAGCAACAATATGGTGGATATTGA 2433 0.4418 MAVKLTDSAIMQMCEDSSAAETLKPVLQVMDLKHVQSNQCNTERYRLVLSDGTHFQQGMLATQKNDLIHSGRLQKGSIILLHQYTCSIVQGRTIIIIIDLDILMETCETLGKPVNFAKTAPSQSATATDQSGTTAGHNVLGPSPDPPKVNQPASSVGSGSFDSGRFGASNAPPAYPKAEPRAMGPSSDLASNGSLNVPFTYPKSEPGATLPRSGQPAGSYGDQNAGYRNAQSEVSRPVQNSYARPPQPMYRQPSPMYNNRGPTTRNEAHLRIVPIAALNPYQGNWTIKARVTAKGDLRHYSNARGDGKVFSFDLLDADGGEIKATCFNAVADQFYNIIEAGNVYLVSRGSIKPAVKSFNHLRNDQELTLDMTTTIQPTHDDMSIPQQTFDFRQIIDVESVDNNTILDVIGVVSSISPTASIMRKNGTETQKRSLQLKDMSGRTRKLREWFDKEGRNIPTISLSKEASNFAKSDVRKTISQIKDEKLGTSEKPDWISVCASVSYMKVDNFCYTACPILIGDRQCNKKVTNNGDGRWRCDRCDQTVDACDYRYLLQFQIQDHTGLTWVTAFQESGAEIMGMSAKDLYDIKFEKMDDEQFGEIMRKVLFSKYIFKLKVKEETYSDEQRVKSTVVKAEKVNFPSESKYLLDMIDKIKSENGEGTNPSSIPNFAGPVSSGTGQAMPPSVSNPVMSNSNSSIDHGNQYSSSFAASTGAPASYVSCSICGGSGHSSAQCPNNMMNMPAQSAARGGGFTSRAPAGSGAAVSGECFKCHQPGHWARDCPAYSAAPPAYGSSNGMQGRYGIAQKQQYGGY 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90878g00019 810 Pfam Replication factor-A C terminal domain 494 645 IPR013955 -
Stsc90878g00019 810 ProSiteProfiles Zinc finger CCHC-type profile. 719 734 IPR001878 GO:0003676|GO:0008270
Stsc90878g00019 810 CDD RPA1N 9 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc90878g00019 810 MobiDBLite consensus disorder prediction 655 696 - -
Stsc90878g00019 810 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc90878g00019 810 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Stsc90878g00019 810 MobiDBLite consensus disorder prediction 121 138 - -
Stsc90878g00019 810 MobiDBLite consensus disorder prediction 216 255 - -
Stsc90878g00019 810 MobiDBLite consensus disorder prediction 656 696 - -
Stsc90878g00019 810 CDD RPA1_DBD_A 274 377 - -
Stsc90878g00019 810 SUPERFAMILY Nucleic acid-binding proteins 475 652 IPR012340 -
Stsc90878g00019 810 MobiDBLite consensus disorder prediction 121 255 - -
Stsc90878g00019 810 SUPERFAMILY Nucleic acid-binding proteins 271 383 IPR012340 -
Stsc90878g00019 810 Pfam OB-fold nucleic acid binding domain 285 354 IPR004365 GO:0003676
Stsc90878g00019 810 SUPERFAMILY Nucleic acid-binding proteins 389 449 IPR012340 -
Stsc90878g00019 810 Gene3D - 3 117 IPR012340 -
Stsc90878g00019 810 FunFam Replication protein A subunit 4 117 - -
Stsc90878g00019 810 SUPERFAMILY Retrovirus zinc finger-like domains 758 784 IPR036875 GO:0003676|GO:0008270
Stsc90878g00019 810 Pfam Replication protein A OB domain 394 451 IPR031657 -
Stsc90878g00019 810 FunFam Replication protein A subunit 271 380 - -
Stsc90878g00019 810 SUPERFAMILY Retrovirus zinc finger-like domains 710 781 IPR036875 GO:0003676|GO:0008270
Stsc90878g00019 810 SMART c2hcfinal6 765 781 IPR001878 GO:0003676|GO:0008270
Stsc90878g00019 810 SMART c2hcfinal6 718 734 IPR001878 GO:0003676|GO:0008270
Stsc90878g00019 810 Gene3D - 709 783 - -
Stsc90878g00019 810 Gene3D - 270 381 IPR012340 -
Stsc90878g00019 810 Gene3D - 460 652 IPR012340 -
Stsc90878g00019 810 PANTHER REPLICATION FACTOR A 1, RFA1 285 630 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc90878g00019 810 MobiDBLite consensus disorder prediction 150 165 - -
Stsc90878g00019 810 Gene3D - 382 455 IPR012340 -
Stsc90878g00019 810 FunFam Replication protein A subunit 460 652 - -
Stsc90878g00019 810 CDD RPA1_DBD_C 478 651 IPR047192 -
Stsc90878g00019 810 ProSiteProfiles Zinc finger CCHC-type profile. 766 780 IPR001878 GO:0003676|GO:0008270
Stsc90878g00019 810 Pfam Zinc knuckle 765 780 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90878g00019 Stsc-Chr90878 51896 54949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90878g00019 1 758 Core DNA Replication Machinery Family AT5G45400 44.213 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90878g00019 K07466 - qsa:O6P43_033421 947.577