Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90878g00018 ATGGCGGCTGTTCAACTCACCCCATCGGCGATAACCACAATTTGCGGCAACAATTTCAGTTCCATTGAGAATCTGAGGCCGGTTTTGCAAGTGATCGACGTGAAGCTTTTGTCGTCGCCTCAGCCCAGGTACCGCTTGGTTCTCTCCGACGGGTCTCACTACCAGCATTCCATACTCGCTACCCACAAGAACCACTTGCTCTTTTCCGGAATCTTGCAAACAACTTCCATTATCCTCCTCACTAAGTTCACCTCCACCGTTATCCAGAACCGCAAGATTATCATCATCGTTGATCTAGATGTGATACTTGAAAAATGTAATCTGATTGGAACTCCTGTGTTAGTGAAATTCGGTGGTGGATCTTATGCAAATCAAAACATGGGTTTCTGCAATCCTGAATCTCAGGCTTCAAGTCCCTTTCAACCGCAGTCCATGCATCAACAGCCAATGAAAGTACCTGAGGCAAAAGAAAATTTCACACCATCAGTTTCCTTGGATATTCAAGCTGTCTTGAAGAGGTGTGAAGCCGTTGAAAAGGAAGTTCAATCATTAAAAGATAGTTTGTCTCTAATCAACAGGAAGGATTCTGAACAAAGAAAGCAGATAGAAGAACTTTGGAAGCAGAATGCAGAGTTGGCCGGAGAGAAAGAGCGCCTCTTACAAGCGATTCAGGGCATTTTGTCTGAAAATCAAAGGATTTAA 702 0.4402 MAAVQLTPSAITTICGNNFSSIENLRPVLQVIDVKLLSSPQPRYRLVLSDGSHYQHSILATHKNHLLFSGILQTTSIILLTKFTSTVIQNRKIIIIVDLDVILEKCNLIGTPVLVKFGGGSYANQNMGFCNPESQASSPFQPQSMHQQPMKVPEAKENFTPSVSLDIQAVLKRCEAVEKEVQSLKDSLSLINRKDSEQRKQIEELWKQNAELAGEKERLLQAIQGILSENQRI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90878g00018 233 SUPERFAMILY Nucleic acid-binding proteins 3 110 IPR012340 -
Stsc90878g00018 233 Coils Coil 167 194 - -
Stsc90878g00018 233 PANTHER PROTEIN CYCLOPS 151 232 IPR040036 GO:0005634|GO:0036377|GO:0043565
Stsc90878g00018 233 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc90878g00018 233 Gene3D - 4 116 IPR012340 -
Stsc90878g00018 233 FunFam Replication protein A subunit 5 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90878g00018 Stsc-Chr90878 48775 50947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90878g00018 3 138 Core DNA Replication Machinery Family AT5G45400 36.364 3.66e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90878g00018 - K07466 adu:107487113 343.584