Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90878g00017 ATGGCGGCTGTTCAACTCACCCCATCGGCGATAACCACAATTTGCGGCAACAATTTCAGTTCCATTGAGAATCTGAGGCCGGTTTTGCAAGTGATCGACGTGAAGCTTTTGTCGTCGCCTCAGCCCAGGTACCGCTTGGTTCTCTCCGACGGGTCTCACTACCAGCATTCCATACTCGCTACCCACAAGAACCACTTGCTCTTTTCCGGAATCTTGCAAACAACTTCCATTATCCTCCTCACTAAGTTCACCTCCACCGTTATCCAGAACCGCAAGATTATCATCATCGTTGATCTAGATGTGATACTTGAAAAATGTAATCTGATTGGAACTCCTGTGTTAGTGAAATTCGGTGGTGGATCTTATGCAAATCAAAACATGGGTTTCTGCAATCCTGAATCTCAGGCTTCAAGTCCCTTTCAACCGCAGTCCATGCATCAACAGCCAATGAAAGTACCTGAGGCAAAAGAAAATTTCACACCATCAGTTTCCTTGGATATTCAAGCTGTCTTGAAGAGGTGTGAAGCCGTTGAAAAGGAAGTTCAATCATTAAAAGATAGTTTGTCTCTAATCAACAGCACAGTTGCATAA 591 0.4433 MAAVQLTPSAITTICGNNFSSIENLRPVLQVIDVKLLSSPQPRYRLVLSDGSHYQHSILATHKNHLLFSGILQTTSIILLTKFTSTVIQNRKIIIIVDLDVILEKCNLIGTPVLVKFGGGSYANQNMGFCNPESQASSPFQPQSMHQQPMKVPEAKENFTPSVSLDIQAVLKRCEAVEKEVQSLKDSLSLINSTVA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90878g00017 196 SUPERFAMILY Nucleic acid-binding proteins 3 110 IPR012340 -
Stsc90878g00017 196 Gene3D - 4 116 IPR012340 -
Stsc90878g00017 196 Coils Coil 167 187 - -
Stsc90878g00017 196 FunFam Replication protein A subunit 5 116 - -
Stsc90878g00017 196 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90878g00017 Stsc-Chr90878 48775 50947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90878g00017 3 141 Core DNA Replication Machinery Family AT5G45400 36.301 1.70e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90878g00017 K07466 - adu:107487113 275.018