Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90878g00003 ATGGATAAAGATGGTGGTGACCAAGGTAGTAATCCATTTTCTAACAACATTGTTGTGTTACTTCTTGCAATGGGTTCAGCTGCTTTTGTTGTCTCACTTTACCATCTCATATCAATTTGTTGTTGCAATAATAACCAACAAAATACCAATAATAATAACAATCACCAAAATCAACAACATGATGGTGGTGGTGGTGAACCAAGCTCTGCTTCTACATCCGTGGCGCATTTGATTCCGTCGCATAAGTATTATAAGAAAAAGGCTAGTGATGAGGGCGGGGATGATCAAGGTGGTGGTGGCACTTGTGCGGTGTGTTTGGGAGATTTTGAGGATGGTGAGGAGTTGAAGACTTTGCCGGAGTGCATGCACTCTTTTCATGTGACATGCATTGATATGTGGCTCAATTCTCATATAAGTTGCCCTGTTTGCCGCGCCAGCGCCACGCCGTCGCCGGTGGGGCTCAGCCATGGCCCTTCAAATGTTTTTGGTCATCATCATGGTGGTGGTTATGGTTTGAATAATAATAATAATGATGCATATCAAGGCATTGATATGGTGCAAATTGCTGTTGTCCAAAGTGGTTTGGTTCGGAGGTGA 597 0.4338 MDKDGGDQGSNPFSNNIVVLLLAMGSAAFVVSLYHLISICCCNNNQQNTNNNNNHQNQQHDGGGGEPSSASTSVAHLIPSHKYYKKKASDEGGDDQGGGGTCAVCLGDFEDGEELKTLPECMHSFHVTCIDMWLNSHISCPVCRASATPSPVGLSHGPSNVFGHHHGGGYGLNNNNNDAYQGIDMVQIAVVQSGLVRR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90878g00003 198 CDD RING-H2_EL5-like 102 144 - -
Stsc90878g00003 198 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Stsc90878g00003 198 SMART ring_2 102 143 IPR001841 -
Stsc90878g00003 198 MobiDBLite consensus disorder prediction 51 72 - -
Stsc90878g00003 198 Pfam Ring finger domain 101 144 IPR001841 -
Stsc90878g00003 198 SUPERFAMILY RING/U-box 101 150 - -
Stsc90878g00003 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 149 IPR013083 -
Stsc90878g00003 198 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 148 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90878g00003 Stsc-Chr90878 10140 10765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90878g00003 18 148 C3H Transcription Factor Family AT5G17600 37.956 5.90e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90878g00003 - - aip:107639941 261.151