Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90877g00007 ATGCTGACGTGCATAGCTAGGCCGAAGAAACTCGGTGACGACTCACTGAGTCACCCGGACGATCCCAATTCCAGCACCGGAAAGAACCAATCCGTCAAGTCCATCACCTCTCAGCTAAAGGATATGGCGTTGAAGGCGTCGGGTGCGTACAAGAACTGCAGTCCGTGCGCGCCGCCGAGTAGACTCAAGACCGCCGGTGGAGTGAGCGGCCCCAGTATTGGAAGCGGCGGAGACTCGGATGGGGACTCGGATCGGTTCCGGTGGTCGTACAGACGGACAGGGAGCTCAAGCTCGTCGGCGGGGACAAGGACAGGGTGGGGGAAGGAGATGGAGGCGAGGCTTAAGGGGATATCGAGCGGCGAGGGGACACCGAGCTCCGCCGGAGCGAGCGGGCGGAGGGCGGAGCCAGTGGTGGTGCTAGTGGAGGAGAACGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTTTTGATCACGTTCGTGTCGCTTCCCCGTGGCGGGAACGACCTAAAGCGCATACGATTCAGTCGCGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTTATGGAACTTTACAATGTTCAAAGACTTAACCGCCAAGCATTCCCTCTTCCAACTCCACCAAGGTCTGAAGATGAGAGTTCAAAGCGTGAATCAATAGAAGACAGCCCTGTAACACCTCCACTAACCAAGGAACGGCTACCTCGAAATTTGTACCGCCCAACAGGTATGGGAATGGGGTACTCATCCTCGGATTCCTTTGATCATCAGTCAATGCAATCCCGGCATTACAATGATTCAAACGGTCCTACTTCAACCCCAAAAGTATCAACCATTAGCGCCGCCAAGACAGAGATATCGTCGATGGATGCTTCTATAAGTAGCTCATCTAGAGAAGTAGACCATTCTGGGGAACTATCAATGAGCAATGCTAGTGACTTGGAGACTGAATGGGTTGAGCAGGATGAACCTGGAGTCTACATTACCATTAGAGCACTCCCAGGTGGCAAACGGGAGCTCAAACGAGTGAGGTTCAGCCGAGAAAAATTCGGGGAGATGCATGCTCGACTTTGGTGGGAGGAGAATCGTGCCAGAATACATGAACAATACTTGTAA 1143 0.5363 MLTCIARPKKLGDDSLSHPDDPNSSTGKNQSVKSITSQLKDMALKASGAYKNCSPCAPPSRLKTAGGVSGPSIGSGGDSDGDSDRFRWSYRRTGSSSSSAGTRTGWGKEMEARLKGISSGEGTPSSAGASGRRAEPVVVLVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPPRSEDESSKRESIEDSPVTPPLTKERLPRNLYRPTGMGMGYSSSDSFDHQSMQSRHYNDSNGPTSTPKVSTISAAKTEISSMDASISSSSREVDHSGELSMSNASDLETEWVEQDEPGVYITIRALPGGKRELKRVRFSREKFGEMHARLWWEENRARIHEQYL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90877g00007 380 Pfam Transcription factor regulating root and shoot growth via Pin3 324 379 IPR013591 -
Stsc90877g00007 380 Pfam Transcription factor regulating root and shoot growth via Pin3 147 201 IPR013591 -
Stsc90877g00007 380 MobiDBLite consensus disorder prediction 1 106 - -
Stsc90877g00007 380 MobiDBLite consensus disorder prediction 18 41 - -
Stsc90877g00007 380 ProSiteProfiles BRX domain profile. 147 202 IPR013591 -
Stsc90877g00007 380 MobiDBLite consensus disorder prediction 253 285 - -
Stsc90877g00007 380 Pfam Transcription factor BRX N-terminal domain 28 56 IPR027988 -
Stsc90877g00007 380 MobiDBLite consensus disorder prediction 210 285 - -
Stsc90877g00007 380 MobiDBLite consensus disorder prediction 297 320 - -
Stsc90877g00007 380 ProSiteProfiles BRX domain profile. 325 380 IPR013591 -
Stsc90877g00007 380 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 380 IPR044532 -
Stsc90877g00007 380 MobiDBLite consensus disorder prediction 90 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90877g00007 Stsc-Chr90877 43549 50136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90877g00007 1 380 Major Intrinsic Protein MIP AT1G31880 43.291 1.44e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90877g00007 - - gmx:100794109 569.311