Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90877g00002 ATGAAACCGTTTCACTCACTCAATTATCCTGATGCGGCATACGATTGTGCACAAATTGATGATTCCAATTACTCCATGGCTCAACATGGTTCCTACCCTTATGGAGATCCCTACTTTTCCGGTTCATTAGTTACTTATGGACCACAGGCTATTAATCAACCTCAAATATTGCCTGAGATGATGGGATTTCAATCCCCGAGAGTTGCTTTACCACTTGATATTGCCGAAGATAACAATAATGTCCCAATTTATGTCAATGCAAAACAATATCATGGTATATTGAGAAGGCGTCAGTCGAGAGCGAAGCTTGAGGCTCAGAACAAACTCATAAAAAATCGTAAGCCATATCTACACGAGTCTCGGCACCGTCATGCTTTGAATCGGGTGAGGGGTTCCGGGGGACGATTCCTGAGCACCAAACAGCATCAACAATCTAATGCTGAAGTTTCCCCCGGCCCCCATTCTGTCTCGAACACCAACAACACATATCACAAGAAAGATGCATCTGAAGTTGAAATTCATCTCTCCAGAACCACCGGCAATAATGCATCTTCAATCACATCCTTCTCTGATCGAATGTCATTGTCAAGCAACATTACCAGGGATGACAATGAGTATCTTTGGAGACAGCCTGAGCCACAGCTATTCCTGGCAAGCCCTTCAAACATGGGTGGAACATACCATGCTCCAGTGGTACGGTGA 702 0.443 MKPFHSLNYPDAAYDCAQIDDSNYSMAQHGSYPYGDPYFSGSLVTYGPQAINQPQILPEMMGFQSPRVALPLDIAEDNNNVPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSTKQHQQSNAEVSPGPHSVSNTNNTYHKKDASEVEIHLSRTTGNNASSITSFSDRMSLSSNITRDDNEYLWRQPEPQLFLASPSNMGGTYHAPVVR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90877g00002 233 ProSitePatterns NF-YA/HAP2 subunit signature. 84 104 IPR018362 GO:0003677|GO:0016602
Stsc90877g00002 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 196 IPR001289 GO:0003700|GO:0006355
Stsc90877g00002 233 ProSiteProfiles NF-YA/HAP2 family profile. 79 139 IPR001289 GO:0003700|GO:0006355
Stsc90877g00002 233 Gene3D - 80 141 - -
Stsc90877g00002 233 SMART cbf3 78 139 IPR001289 GO:0003700|GO:0006355
Stsc90877g00002 233 PRINTS CCAAT-binding transcription factor subunit B signature 82 104 IPR001289 GO:0003700|GO:0006355
Stsc90877g00002 233 PRINTS CCAAT-binding transcription factor subunit B signature 113 136 IPR001289 GO:0003700|GO:0006355
Stsc90877g00002 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 82 136 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90877g00002 Stsc-Chr90877 4562 6332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90877g00002 37 169 CCAAT-HAP2 Transcription Factor Family AT3G14020 55.072 7.41e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc90877g00002 CBFB_NFYA 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90877g00002 K08064 - gmx:100793856 251.521