Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90876g00008 ATGGTGGCAAGATCATGCATCAATTTGTTGGAGTTGGTGTCAGGGGAAGTTTTAAATTTCCCACAAACTCGCCAAGCTCTTCGGCGAGTTATGACAGTTCCAGGGACACAGTCTGATGTAGATGGAAAACAAAGGGATGATGATGGTATTAACTTAAATGATTTCTCATCAGAATGCCATCACAAGATAATCCTAGTAGCAAATTTTCTTCCCATCAATGCTGAAAAGGACAAAGAATCTGGCAGATGGTGCTATACTTATGATGAAGGTTCAATCTTGTTGCAGTTAAAAGATTCTATCTCTTCAGACACTGATGTTGTTTTCGTGGGATCGATGAAGGCCGACATAGATGCTAGCGAACAAGAGGATGTTTCTGTTGAGTTGCTGGAGGAATTCAATTGTGTTCCTACCTTTATTCCTTCAGATCTTCAGAAACAATTTTACAATGGATTCTGCAAGCAACATTTGTGGCCTTTATTCCATTACATGTTGCCTATGTATGCTGAATTTTGCAATCGATTCGATCGATCACTATGGCAGGCTTATGTTTCTGCTAACAAGATCTTTGCAGATAAAGTCATGGAGGTCATTAATCCAGAACATGATTATGTATGGGTTCATGATTATCATCTTATGGTTCTTCCAACATTTCTTCGAAAGCGTTGTAATAAGATCAAGCTAGGATACTTCCTTCATAGTCCATTTCCTTCATCAGAAATCTATAGGACTATACCTGTTAGAGATGAGATTTTGAAAGCACTGCTCAATGCAGATTTAATTGGCTTTCATACATTTGATTATGCCCGCCATTTTCTATCGTGCTGCAGCCGAATTCTCGGCTTAAAACATGAATCCAAAAGGGGTTACATTGAGCTTGAATACTTTGGCCGTACAATATCCATTAAGATCTTGCCAGTGGGGGTTCATATGGATTGGCTTCAGTCTGCATTAGACCACCCTTCTTCTTTAGTCAAAGCAAGAGAAATCTACAGCAAGTTCAATGGTAAAAAACTTGTTCTTGGTGTTGATGATATGGACATTTTCAAAGGTATCAGTCTAAAGCTCTTGGCGATCGAACAACTCCTTCAGCAGTATCCGAAACTTCAGGGGGAACTTGTGCTAGTCCAGATTGTGAATCCTCCAAGGAGTAATGGCAAAGACGTCGAGGAAGCGAAGAAGGAGACATGCATTACTGCTAATAGGATAAATGAGAGGTTTGGTTTTCCTGGTTACCAACCTGTCATAATCATTGATCATCCTATACCTGTGTATGAGAAGATTTCCTACTTTGCTTTGGCAGATTGTTGCATTGTGAATGCTGTAAGGGATGGTATGAATTTGATTCCATATGAGTATGTAGTTTGTAGGCAAGGGAGTACTAAAATGGATGAAGCTCTAGAACTTGCTCCTGATTCTCCTCATACAAGTGCACTTGTTGTTTCAGAATTCATGGGTTGCTCACCATCTCTTAGTGGTGCTATCAGGGTGAATCCATGGGACATCATTGGTGTTGCTGAAGCACTGAATTTGGCCATCAAAATGCCAGGCAGAGAGAGACAGCTGCGACACGATAAGCATTATCGGTATGTTAGGTCTCATGATTTAGCTTACTGGAGCAGTAGTTTCTTGAGGCATCTAGAACACTCTTGTAAGGATCATTTTAGGAATCATTGCTGGGGAATTGGGTTTGGTCTGAGTTTCAGAGTCTTGTCCCTTTCTCCAAGTTTCAGGAAGGTTTCCAATGGTGAAATTGTCTCTGCATATAGAAGGACAAGTAGCAGGGCACTTTTTCTAGATTATGATGGCACAATTGTACCTCACTCCTCCATTGTTAAAAGCCCCAGTCCTGAAGTCATAGCCAGTCTAAACAACATTTGCAATGACCCTAACAACACAGTGTTTATAGTAAGTGGCAGAGGAAAAACCACATTGGGTGAATGGTTCAATCAGTGTAAGCATCTTGGTATAGCAGCTGAGCATGATGGGGACAGCAATCAAGTTGGGAAATGA 2010 0.407 MVARSCINLLELVSGEVLNFPQTRQALRRVMTVPGTQSDVDGKQRDDDGINLNDFSSECHHKIILVANFLPINAEKDKESGRWCYTYDEGSILLQLKDSISSDTDVVFVGSMKADIDASEQEDVSVELLEEFNCVPTFIPSDLQKQFYNGFCKQHLWPLFHYMLPMYAEFCNRFDRSLWQAYVSANKIFADKVMEVINPEHDYVWVHDYHLMVLPTFLRKRCNKIKLGYFLHSPFPSSEIYRTIPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLKHESKRGYIELEYFGRTISIKILPVGVHMDWLQSALDHPSSLVKAREIYSKFNGKKLVLGVDDMDIFKGISLKLLAIEQLLQQYPKLQGELVLVQIVNPPRSNGKDVEEAKKETCITANRINERFGFPGYQPVIIIDHPIPVYEKISYFALADCCIVNAVRDGMNLIPYEYVVCRQGSTKMDEALELAPDSPHTSALVVSEFMGCSPSLSGAIRVNPWDIIGVAEALNLAIKMPGRERQLRHDKHYRYVRSHDLAYWSSSFLRHLEHSCKDHFRNHCWGIGFGLSFRVLSLSPSFRKVSNGEIVSAYRRTSSRALFLDYDGTIVPHSSIVKSPSPEVIASLNNICNDPNNTVFIVSGRGKTTLGEWFNQCKHLGIAAEHDGDSNQVGK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90876g00008 669 CDD GT20_TPS 62 547 IPR001830 GO:0003824|GO:0005992
Stsc90876g00008 669 Gene3D Glycogen Phosphorylase B; 54 314 - -
Stsc90876g00008 669 Gene3D - 593 669 IPR023214 -
Stsc90876g00008 669 Pfam Trehalose-phosphatase 597 660 IPR003337 GO:0003824|GO:0005992
Stsc90876g00008 669 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 55 314 - -
Stsc90876g00008 669 Gene3D Glycogen Phosphorylase B; 315 532 - -
Stsc90876g00008 669 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 660 IPR001830 GO:0003824|GO:0005992
Stsc90876g00008 669 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 62 551 - -
Stsc90876g00008 669 Pfam Glycosyltransferase family 20 62 547 IPR001830 GO:0003824|GO:0005992
Stsc90876g00008 669 SUPERFAMILY HAD-like 594 660 IPR036412 -
Stsc90876g00008 669 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90876g00008 Stsc-Chr90876 21577 23686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90876g00008 1 660 Trehalose Biosynthesis Gene Families AT1G23870 65.303 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90876g00008 K16055 - qsa:O6P43_022731 1026.54