Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc90876g00002 | ATGAAAACCCTCTCATCATCTTCATCTTCATTGCTGTCACAATCTCTCTACAACTCCAACAGGTTCCAAGAATCATGGAGGCGCTCCAGAGCACTTGAGAGACAGCTTCATCATCTCTTCCGAATGCAAGATTCGGGCCTAGAACAATCCATCATTGATGCTCTCCCAGTGTTCTACTACCAAGACTTGCTGGGTCTGAAAGAGCCATTTGATTGTGCAGTGTGCCTCAGTGAATTCTCCCATGAAGAGAAGCTGAGGTTGGTTCCAATTTGCAGCCATGCATTTCACATGAACTGCCTTGACACGTGGCTTCTCTCAAACTCAACATGCCCTCTCTGTAGAGCAACTCTCTCTAGCTCTAATGTGAACCAGAATCCATCAGTGATGTTTCGTGTTGAGGAAGAGAACAAGGATAATGGTGATGAAGGAGGAGGAGTAAGTAAAAGGGTGTTAAGTGTGAGACTTGGGAAACTGAGGAACAGTGGATTGAGTGAAAGAGAGGAAAGTAGTAGTAGTAGTTTGGGATTGGATGGGAGAAGATGCTATTCAATGGGTTCATATGAGTATGTGGTTAGAGAATCGAATGATCTGCAAGTGGAAGTGGTGTTATCTCAGTCTCTTCATCATCATGTTGGTGGTGAAGGAGAAGAAGAAGAAGGAAAGAAGATAGGGAATAAGAGAAGAAGAGATGGGATTTCCCGAGCTGCTAGTGCGTTAGGGGATGGAGCATGTTTAGCCATACGAACTACAAAGGCGCCGGTGCGTACTTCTTTTCGTTTCATTTAG | 786 | 0.4466 | MKTLSSSSSSLLSQSLYNSNRFQESWRRSRALERQLHHLFRMQDSGLEQSIIDALPVFYYQDLLGLKEPFDCAVCLSEFSHEEKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRATLSSSNVNQNPSVMFRVEEENKDNGDEGGGVSKRVLSVRLGKLRNSGLSEREESSSSSLGLDGRRCYSMGSYEYVVRESNDLQVEVVLSQSLHHHVGGEGEEEEGKKIGNKRRRDGISRAASALGDGACLAIRTTKAPVRTSFRFI | 261 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc90876g00002 | 261 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 114 | IPR001841 | - | |
Stsc90876g00002 | 261 | MobiDBLite | consensus disorder prediction | 208 | 229 | - | - | |
Stsc90876g00002 | 261 | Pfam | Ring finger domain | 71 | 114 | IPR001841 | - | |
Stsc90876g00002 | 261 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 125 | IPR013083 | - | |
Stsc90876g00002 | 261 | MobiDBLite | consensus disorder prediction | 210 | 229 | - | - | |
Stsc90876g00002 | 261 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE | 19 | 203 | - | - | |
Stsc90876g00002 | 261 | SMART | ring_2 | 72 | 113 | IPR001841 | - | |
Stsc90876g00002 | 261 | CDD | RING-H2_EL5-like | 71 | 114 | - | - | |
Stsc90876g00002 | 261 | FunFam | E3 ubiquitin-protein ligase ATL6 | 35 | 120 | - | - | |
Stsc90876g00002 | 261 | SUPERFAMILY | RING/U-box | 51 | 129 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc90876g00002 | Stsc-Chr90876 | 4112 | 6280 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc90876g00002 | 31 | 201 | C3H Transcription Factor Family | AT2G18650 | 44.240 | 4.88e-47 | 160 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc90876g00002 | - | - | adu:107492421 | 292.352 |