Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90876g00002 ATGAAAACCCTCTCATCATCTTCATCTTCATTGCTGTCACAATCTCTCTACAACTCCAACAGGTTCCAAGAATCATGGAGGCGCTCCAGAGCACTTGAGAGACAGCTTCATCATCTCTTCCGAATGCAAGATTCGGGCCTAGAACAATCCATCATTGATGCTCTCCCAGTGTTCTACTACCAAGACTTGCTGGGTCTGAAAGAGCCATTTGATTGTGCAGTGTGCCTCAGTGAATTCTCCCATGAAGAGAAGCTGAGGTTGGTTCCAATTTGCAGCCATGCATTTCACATGAACTGCCTTGACACGTGGCTTCTCTCAAACTCAACATGCCCTCTCTGTAGAGCAACTCTCTCTAGCTCTAATGTGAACCAGAATCCATCAGTGATGTTTCGTGTTGAGGAAGAGAACAAGGATAATGGTGATGAAGGAGGAGGAGTAAGTAAAAGGGTGTTAAGTGTGAGACTTGGGAAACTGAGGAACAGTGGATTGAGTGAAAGAGAGGAAAGTAGTAGTAGTAGTTTGGGATTGGATGGGAGAAGATGCTATTCAATGGGTTCATATGAGTATGTGGTTAGAGAATCGAATGATCTGCAAGTGGAAGTGGTGTTATCTCAGTCTCTTCATCATCATGTTGGTGGTGAAGGAGAAGAAGAAGAAGGAAAGAAGATAGGGAATAAGAGAAGAAGAGATGGGATTTCCCGAGCTGCTAGTGCGTTAGGGGATGGAGCATGTTTAGCCATACGAACTACAAAGGCGCCGGTGCGTACTTCTTTTCGTTTCATTTAG 786 0.4466 MKTLSSSSSSLLSQSLYNSNRFQESWRRSRALERQLHHLFRMQDSGLEQSIIDALPVFYYQDLLGLKEPFDCAVCLSEFSHEEKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRATLSSSNVNQNPSVMFRVEEENKDNGDEGGGVSKRVLSVRLGKLRNSGLSEREESSSSSLGLDGRRCYSMGSYEYVVRESNDLQVEVVLSQSLHHHVGGEGEEEEGKKIGNKRRRDGISRAASALGDGACLAIRTTKAPVRTSFRFI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90876g00002 261 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Stsc90876g00002 261 MobiDBLite consensus disorder prediction 208 229 - -
Stsc90876g00002 261 Pfam Ring finger domain 71 114 IPR001841 -
Stsc90876g00002 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 125 IPR013083 -
Stsc90876g00002 261 MobiDBLite consensus disorder prediction 210 229 - -
Stsc90876g00002 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 203 - -
Stsc90876g00002 261 SMART ring_2 72 113 IPR001841 -
Stsc90876g00002 261 CDD RING-H2_EL5-like 71 114 - -
Stsc90876g00002 261 FunFam E3 ubiquitin-protein ligase ATL6 35 120 - -
Stsc90876g00002 261 SUPERFAMILY RING/U-box 51 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90876g00002 Stsc-Chr90876 4112 6280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90876g00002 31 201 C3H Transcription Factor Family AT2G18650 44.240 4.88e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90876g00002 - - adu:107492421 292.352