Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90876g00001 ATGATTTCACTCTTTCTAATAATTCATCAAAAACCACTTGAAAAAAAAAAAAGCAACTCAAGAATAATGGTTGTGATGATGAACCCAATCTTGGTACTCTCCATTACCACCATACTGTTCTTATTATTCTCTCCAATGGCTTATTCATCAGAGAGCGAAGTGGTGAAGAGCGCATTGGTGAGATTCATGGACAATCTTGCACCATGGAATAACAATCCAGAGAGAGAAGCAAGCAGGTACTGGGGATGGAATCTTGAGACAGATCCATGCACAGATAACTGGAAAGGAGTGGGTTGTTCCTCAGATGGAAGTGTGAAAACCATAGTTCTTGATGATTCAAACCTCAGTGGAACCCTAGATGCTACCTCTCTCTGCATGGCCAAGTCCCTTCAGATTCTGAGCCTCAAGAGGAACAACTTGCATGGATCCATACCTGAAGCCATTGGAAACTGCAAGTATTTGACCCGTTTGTACCTCAGTGATAACAACTTCTCCGGTAACCTTCCGAGTTCTCTTCAACATTTATGCAGCTTGAGGTGGATTCACATTGCCAGAAACAAGTTCACTGGTCTCCTTTCTGATAAGATACCTCTTTCATCCTTGATATCCTTTCTCGGTGAGAATAACAACTTCACCGGGGAGATACCTGATTTTGACTTGACAAAGTTGATTCAATTGAACGTCTCCAACAACAACTTGAAGGGTCAGATCCCTGACGTGAGGAACAAGTTTGGTGTGGAAAGCTTTTCTGGCAATCCTGATTTGTGTGGATTGCCGCTCCCGGCCGCGTGTCCACCTAGTCCGTCGCCAAGGAAGGAAAAAAGACTATTTATCACCGACGGTGTGGCCATTTATTCCGGCTACATCATTCTTGGCATCACAGTGGTGGCATTCTTTGTGTACAAACTGGCCAGGAAATCCATCTGCAAATCGGATGCATCAGAATCTCTCAACAAGAAAGAAGGCACACGGCAACGATTAACTCGCAATGATGGTGGAAAGAACAGAGAGGATTGTTCTTGTGAGAGAAAGAGTGGTGGTGGTGGTGTTGAGATGAGATCAGAGCCTTCAATAGCATCACTTGAGAGTGGAATAACATTGATGAGCACATCAACGCTGGTTGTACTGTCAAGCAGGATGTCAAAGGCGATGAGGTTCGAGGATCTGCTGAGAGCACCAGCTGAGTTGATTGGGAGAGGGATGCATGGGAGCCTCTACAAGGTGATGCTCGACAATGGTGTGTTCTTGGCTGTTAAGAGGATCAAGGATTGGGGGATCTCTGAATCTGATTTTCAGAGGAGAATTTCCAAAGTTAGCCAAGTTAACCATCCACTCCTTTTGCCACCTCTTGCTTACTATTGTTCCCGCCAAGAGAAGCTTCTTGCATATGAGTACATCGACAATGGCAGTCTCTTCAACACGCTCTACGCAGCTGGAACACAAAATGGAAAACCCTTTTGGTGGGGAAGCAGACTAAACGTTGCTGCAAAAATAGCAGAAACTTTAGCTTACATGCATGAAGAGCTTCGTGAGAGTGGAATAGCACACGGAAACTTAAAATCAAGCAACATTTTGTTCAACAGCAACATGGAACCATTAATAAGTGAGTATGGCCTAATGGTGATTGAACACCAAGCTCTGAGATCACTCACTCACAGCAAGAGTGTGAGGAACAGGGTTCTGACTGCTGCACATGCATACAGCACTTTCAAAGTTGATGTATACGCCTTTGGTGTGATACTGTTGGAGCTTGTCACAGGGAGAGTGGCTCAGAATCAAGGGGCTTTTGATCTGGTTAAGTGGGCTAATTCTGTGGTTAGAGAGGAATGGAGTGTTCAAGTGTTTGATAAAAACTTGGTGTCAGAAGGTGCTAGTGGAGAGAGGATGATGAGCTTGTTGCAGATTGCATTGAAATGCATCAATCCTTCTCCTGCTGATAGACCAAGCATGAGTGAAGTTGCATTAGCCTTAATTAAATTGAATGAGGAGGAAGAAACTTCTTTAAGCATCTAG 2013 0.4411 MISLFLIIHQKPLEKKKSNSRIMVVMMNPILVLSITTILFLLFSPMAYSSESEVVKSALVRFMDNLAPWNNNPEREASRYWGWNLETDPCTDNWKGVGCSSDGSVKTIVLDDSNLSGTLDATSLCMAKSLQILSLKRNNLHGSIPEAIGNCKYLTRLYLSDNNFSGNLPSSLQHLCSLRWIHIARNKFTGLLSDKIPLSSLISFLGENNNFTGEIPDFDLTKLIQLNVSNNNLKGQIPDVRNKFGVESFSGNPDLCGLPLPAACPPSPSPRKEKRLFITDGVAIYSGYIILGITVVAFFVYKLARKSICKSDASESLNKKEGTRQRLTRNDGGKNREDCSCERKSGGGGVEMRSEPSIASLESGITLMSTSTLVVLSSRMSKAMRFEDLLRAPAELIGRGMHGSLYKVMLDNGVFLAVKRIKDWGISESDFQRRISKVSQVNHPLLLPPLAYYCSRQEKLLAYEYIDNGSLFNTLYAAGTQNGKPFWWGSRLNVAAKIAETLAYMHEELRESGIAHGNLKSSNILFNSNMEPLISEYGLMVIEHQALRSLTHSKSVRNRVLTAAHAYSTFKVDVYAFGVILLELVTGRVAQNQGAFDLVKWANSVVREEWSVQVFDKNLVSEGASGERMMSLLQIALKCINPSPADRPSMSEVALALIKLNEEEETSLSI 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90876g00001 670 PANTHER OS05G0588300 PROTEIN 36 659 - -
Stsc90876g00001 670 SUPERFAMILY L domain-like 84 260 - -
Stsc90876g00001 670 Gene3D Phosphorylase Kinase; domain 1 366 465 - -
Stsc90876g00001 670 Pfam Protein kinase domain 395 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90876g00001 670 Gene3D Ribonuclease Inhibitor 53 201 IPR032675 -
Stsc90876g00001 670 FunFam Leucine-rich repeat receptor protein kinase EMS1 121 218 - -
Stsc90876g00001 670 Gene3D Transferase(Phosphotransferase) domain 1 466 669 - -
Stsc90876g00001 670 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Stsc90876g00001 670 MobiDBLite consensus disorder prediction 319 354 - -
Stsc90876g00001 670 MobiDBLite consensus disorder prediction 319 344 - -
Stsc90876g00001 670 Gene3D Ribonuclease Inhibitor 202 264 IPR032675 -
Stsc90876g00001 670 ProSiteProfiles Protein kinase domain profile. 391 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90876g00001 670 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524
Stsc90876g00001 670 SUPERFAMILY Protein kinase-like (PK-like) 394 657 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90876g00001 Stsc-Chr90876 48 3616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90876g00001 38 663 Receptor kinase-like Gene Family AT5G24100 31.685 1.51e-87 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc90876g00001 Pkinase 7.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90876g00001 - - ahf:112695663 1092.03