Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90875g00003 ATGTCTGAAGCTTTGATCAATGGCTTGGCTGGAGCTGGTGGAGGGATCATAGCTCAGCTCATCACATACCCTCTTCAAACTGTAAACACTCGTCAACAAACAGAGCGTGATCCGAAGAAGGATAAGAGCAAAAGCATAGGAACTCTCCAGCAAATGTGCCAGGTTGTGAAACATGAGGGGTGGGAGCGGTTGTACGGAGGTTTGACGCCATCTCTAGTGGGTACAGCTGCATCTCAGGGTGTTTATTATTATTTCTATCAAATATTCAGGAACAAAGCCGAAGTGGCTGCACTCGAACAGAAGAGGCTAGGCATTGGTGATGGATCAGTTGGGATGTTCTCCTCGCTTATTGTTGCTGCTTTATCTGGGTGTGTTAATGTGCTATTGACAAATCCCATATGGGTAGTTGTTACACGTATGCAGACGCACAAAAAAGAGTCAAGAAGAACTCCACCTAGTGATGTGTTGTTAAATCCCACTGAGCAAGCAATACTTCCTGCGGTTGAGCCTCTTGCTTATGGAACTAGCGATGTGATTCAAGAAGTCTATGGTGAAGCCGGAGTTTGGGGGTTTTGGAAAGGTGTATTACCGACATTGATCATGGTTAGCAACCCTTCTATACAGTTCATGCTGTATGAAACTATGTTGCTGAAGTTAAAACGAAGACGTGCCCAAAGTAAGAACGTTAGCAATGGGGTATCTGCATTGGAGGTATTTCTTCTGGGAGCTTTGGCTAAGCTTGGAGCTACTATTGTGACATATCCTCTTCTAGTTGTGAAGGCAAGGCTGCAAGCTAGACAGGTCAAAAATGGAGACAAGAGACACCATTATAAAGGTACATTGGATGCTATTATCAAGATGATTCGCTATGAAGGGTTTTATGGATTTTACAAAGGCATGGGAACCAAGATTGTTCAAAGTGTGCTGGCTGCTGCTGTTTTGTTCATGGTGAAGGAAGAACTAGTTAAACAAACTCGTTTCTTGCTCACTAAGAATGCCACCAACTCTGTAAAACCAAAGCATGTGTGA 1029 0.4373 MSEALINGLAGAGGGIIAQLITYPLQTVNTRQQTERDPKKDKSKSIGTLQQMCQVVKHEGWERLYGGLTPSLVGTAASQGVYYYFYQIFRNKAEVAALEQKRLGIGDGSVGMFSSLIVAALSGCVNVLLTNPIWVVVTRMQTHKKESRRTPPSDVLLNPTEQAILPAVEPLAYGTSDVIQEVYGEAGVWGFWKGVLPTLIMVSNPSIQFMLYETMLLKLKRRRAQSKNVSNGVSALEVFLLGALAKLGATIVTYPLLVVKARLQARQVKNGDKRHHYKGTLDAIIKMIRYEGFYGFYKGMGTKIVQSVLAAAVLFMVKEELVKQTRFLLTKNATNSVKPKHV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90875g00003 342 SUPERFAMILY Mitochondrial carrier 4 320 IPR023395 -
Stsc90875g00003 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 92 IPR018108 -
Stsc90875g00003 342 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 330 IPR044712 GO:0006862|GO:0055085
Stsc90875g00003 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 218 IPR018108 -
Stsc90875g00003 342 Gene3D Mitochondrial carrier domain 3 326 IPR023395 -
Stsc90875g00003 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 324 IPR018108 -
Stsc90875g00003 342 Pfam Mitochondrial carrier protein 110 219 IPR018108 -
Stsc90875g00003 342 Pfam Mitochondrial carrier protein 6 91 IPR018108 -
Stsc90875g00003 342 Pfam Mitochondrial carrier protein 234 322 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90875g00003 Stsc-Chr90875 15275 19544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90875g00003 24 323 Chloroplast and Mitochondria Gene Families AT1G25380 29.605 7.21e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90875g00003 K13354 - gmx:100775784 537.724