Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90874g00015 ATGGTATCTGGTGTCATACCACCTAAACTGTTTCAGCTCACCAACTTGGGCTCACTTCATCTTTCTAACAATCAATTGGGTGGAAACATACCATCAGAGATAGGAAATGTTGATTCCCTTTGCGATGTAAACATATCCTATAACAAGTTAGAAGGATTGATCCCATCTCCTATTCTAAACTGTAGCACTTCTGGGAAAGCAAACTTCAGATATAATCTGTTAAGTGGAAATATTCCTTCAAAAATCGGCTATGTTGATGAACTTGACATTAGCCACAATCTTCTTAGCGGTAGTGTACCCTTCTTCTCCATTACTGGAGGTCCTTATGATCCTTTATCAAGTTTGGATCTAAGCTACAATAATCTCACGGGTACCCTACCAATAGAACTTGCAAATATGCCTCGTATAAATTTGTCATTCAACTCTTTTGAGTGTCCACAAGCCTTCAAAGGCTTCCATGCTGAATCCTTAATTGGTAATACTCCCAAGTGCAATGCCAGCTCTTTTGTTCAACTTCAGAAAACCAAAAGACCAAACAACCTTATTGTAATTGCTCTTCCTATCACTTGTTGCTTCCTCCTCATCATTTTTGTGGCCATATTTTCTTTTGTTCGGCGCACCAAGAAGGTTAAATTTGAACAAAGTTCAGAAAAGAATGGAGACTTGTTTTCCATATGGAACTATGATGGTAAAATTGCATTTGAAGACATCATCCAAGCAACACATGACTTTGATATCAGATACTGCATAGGAACTGGTGGTTATGGCAGTGTGTACAGAGCGCAACTTCCAAGTGGCAAAATTGTTGCGTTGAAGAAACTTCACCAAAGGGAGTCTCAAAATCCCTCTTTTGACAGGAGCTTCCGCAACGAGGTAAAGATGTTATCACAAATCCGTCATAGAAACATTGTCAAGCTTCATGGTTTTTGTCTCCACAATCGGTGCATGTTTTTGGTGTATGAATACATGGAAAGAGGAAGCTTATTTTATGCCTTGAGCATTGATGATGAAGCTAAGGAGCTAACTTGGAGCAAGAGGGTGAATATCATTAGCGGAACAGCTAATGCTTTGGCTTACATGCATCATGATTGTTCCCCGCCAATAGTTCACAGAGATGTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGCACTGCTAGACTTATTGATCCTGATTCTTCAAATCAGACGTTACAAGAACATACGGCTACCTTGCGCCAGAGTTGGCATACACAATGA 1263 0.399 MVSGVIPPKLFQLTNLGSLHLSNNQLGGNIPSEIGNVDSLCDVNISYNKLEGLIPSPILNCSTSGKANFRYNLLSGNIPSKIGYVDELDISHNLLSGSVPFFSITGGPYDPLSSLDLSYNNLTGTLPIELANMPRINLSFNSFECPQAFKGFHAESLIGNTPKCNASSFVQLQKTKRPNNLIVIALPITCCFLLIIFVAIFSFVRRTKKVKFEQSSEKNGDLFSIWNYDGKIAFEDIIQATHDFDIRYCIGTGGYGSVYRAQLPSGKIVALKKLHQRESQNPSFDRSFRNEVKMLSQIRHRNIVKLHGFCLHNRCMFLVYEYMERGSLFYALSIDDEAKELTWSKRVNIISGTANALAYMHHDCSPPIVHRDVTSSNILLNSELHAVVSDFGTARLIDPDSSNQTLQEHTATLRQSWHTQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90874g00015 420 FunFam Leucine-rich repeat receptor protein kinase EMS1 6 101 - -
Stsc90874g00015 420 Gene3D Transferase(Phosphotransferase) domain 1 323 417 - -
Stsc90874g00015 420 SUPERFAMILY Protein kinase-like (PK-like) 225 405 IPR011009 -
Stsc90874g00015 420 PANTHER LEUCINE RICH REPEAT KINASE 2 3 405 - -
Stsc90874g00015 420 Gene3D Ribonuclease Inhibitor 1 175 IPR032675 -
Stsc90874g00015 420 FunFam Leucine-rich repeat receptor protein kinase MSP1 206 322 - -
Stsc90874g00015 420 ProSitePatterns Tyrosine protein kinases specific active-site signature. 368 380 IPR008266 GO:0004672|GO:0006468
Stsc90874g00015 420 Gene3D Phosphorylase Kinase; domain 1 204 322 - -
Stsc90874g00015 420 Pfam Protein kinase domain 249 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90874g00015 420 SUPERFAMILY L domain-like 3 144 - -
Stsc90874g00015 420 ProSiteProfiles Protein kinase domain profile. 244 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90874g00015 420 ProSitePatterns Protein kinases ATP-binding region signature. 250 272 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90874g00015 Stsc-Chr90874 58794 60156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90874g00015 2 403 Receptor kinase-like Gene Family AT4G08850 38.631 2.58e-94 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90874g00015 Pkinase 2.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90874g00015 - - gmx:102667972 465.692