Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90874g00010 ATGGTGGCAAAGAGTAGTAACTTGGCTTTGTTTATTATTGTAGTGTGGCTTCTGTTTTGCACCACAGCCTCTTATCTCATATTCCCACCCTCTTCCTTCAATAATTCAGAGAGACATGCTTTGATACAGAGCGGTTGGTGGAGCCATGACAGCATCAATATCTCAAACCATTGCTATTGGTACGGCATAGTCTGTGACCATGCTGGAAGTGTTGTAGAGATTGCTGGATGGGATTTCAATATTAATTCCAAATCATTGCAGCTACAGAGCTTGAATCTCACCGCCTTCCCCAATTTGGTATCTCTGTATCTTTCTCAACTGGGACTTACAGGAAGCATCCCCAAAGAAATTGGTACTCTCAAAAAGCTTTCTTATCTTGATCTGTCCTGTAATAATCTTGACGGTAAGCTGCCTCCAACACTTTCAAACCTCACTCAACTTGTAGAGTTTGATGTTTCTTTCAATGCTCTTGGTGGTACCATTCCTTCTAGTTTTGGTCATCATTGGGAGAGTTTGATACTTCTCTACTTACATTTTAATCAAATTGAAGGTCCTATACCACTAGAATTAGGTAACTTGAAAAGCTTAGAGGTACTGTATCTTTCAGATAATTCACTGACAGGTACAATTCCTTCTACTTTGGGTCTATTGGAGAAGTTAACAATTCTTGACCTTGTTTCAAACCAAATAGAAGGACATATACCAGTAGAGATAGCAAATTTGAAACAGTTACAAATTTTAAATCTTTCGAGTAACTCTCTTTCTGGTCAGATCCCACTAGAATTAGGAAATTTGAAAAGGTTAGAGGAACTATATCTCTCAAATAATTCACTGGCAGGTACAATTCCTTATACTTTGGGAAATTTGCAACAATTACAAATTTTAAATCTTTCAAGTAACTCTCTTTCTGGTCAGATCCCACTTGAAATAGGAGCATTGGCGTCTTTACAACAGTTAAACATTGATTTCAATCAAATAAATGGTTCCATTCCATTAGAATTTCAGAATTTGATCATGCTGACCACTTTGAATCTTTCTCACAATATGATATCTGGTGTCATACCACCCAAACTGTTTCAGCTCACCAAGTTGGCCTCACTTCATCTTTCTAACAATCAATTGGCTGGCAACATACCATCAGAGATAGGAATTCCTGATTCCCTTTGCGATGTAAACCTATCCTATAACAAGTTAGAAGGATTGATCCCATTTCCAATTCTAAACTGTGGCACTTTTGGGGAAGCTGACTTGAGTAATAATCTCTTAAGTGGAAATATTCCTTCAAAAATCGGTAATGTCGTTAAATTTGACATCAGTCACAATCTTCATAGCGGTAGTGTACCCTTTTTGTTCATTACTGAAGGTTCTTATACTCCTGGGAACAAACTTTTTTTAACAAGTTTGGACCTTAGCTACAACAATTTCACAGGTACCTTACCAATAGAACTTGCAGATATACCTCATATAAATTTGTCATTCAACTCTTTTGAGTGTCCACAAGCCTTCAAAGGCTTCCATGCTGAATCCTTAATTGGTAATACTCCCAAGTGCAATGTCACATCTTTTGTTCAAGTTCAGAAAACCAAAAGCCCAAAGAACCTTATTGTAATTGCTCTTCCTGTCACTTGTTGCTTCCTCCTCATCATTTTTGTGGGCATATTTTGTTATATTCGACGCACCAAGAAGGTTAAATTTGAACAATGTTCTGAAAAGAATGGGGACTTGTTTTCCATATGGAACTATGATGGTAAAATTGCATTTGAAGACATCATCCAAGCAACACATGACTTTGATATCAGATACTGCATAGGAACCGGTGGTTATGGCAGTGTGTACAGAGCACAACTTCCAAGTGGCAAAATTGTTGCATTGAAGAAACTTCACCAAAGGGAATCTCAAAATCCTTCTTTTGACAGGAGCTTCCGCAACGAGGTAAAGATGTTATCACAAATCCGTCATAGAAACATTGTCAAGCTTCATGGTTTTTGTCTCCACAATCGGTGCATGTTTTTGGTATATGAATACATGGAAAGAGGAAGCTTATTTTATGCCTTGAGCATTGATGATGAAGCTAAGGAGCTAACTTGGAGCAAGAGGGTGCATATCATTAGCGGAACAGCTAATGCTTTGGCTTACATGCATCATGATTGTTCCCCGCCAATAGTTCACAGAGATGTGACAAGCAACAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGCACTGCTAGACTTCTTGATCCTGATTCTTCAAATCAGACATTACAAGTTGGAACATACGGATACCTTGCACCAGAGTTGGCATACACAATGAGAGTGACAGAAAAGTGTGATGTATACAGTTTTGGAGTGGTGGCATTGGAAACATTAATGGGAATGCATCCAAAAGAGCTAATCTTGTCTTTGTTGGACTCTTGTCACAACAAAAACATAATGGTGAAAGATCTCTTGGATTCACGCATCCGTATACCATTATGTCAGAGAGACACTGAAGCAATAGTTCATGTGCTAAAATTGGCATTGGCATGCTTGCGCTCTAATCCAAAGTCAAGACCATCAATGCAACAAGTGGCTTATGAACTTTCTACTTCTAAACAGTCACTGCCTTTGCCTTTTGCTGAGATTACAGTTCATCAGTTGATTGCTTAA 2661 0.3837 MVAKSSNLALFIIVVWLLFCTTASYLIFPPSSFNNSERHALIQSGWWSHDSINISNHCYWYGIVCDHAGSVVEIAGWDFNINSKSLQLQSLNLTAFPNLVSLYLSQLGLTGSIPKEIGTLKKLSYLDLSCNNLDGKLPPTLSNLTQLVEFDVSFNALGGTIPSSFGHHWESLILLYLHFNQIEGPIPLELGNLKSLEVLYLSDNSLTGTIPSTLGLLEKLTILDLVSNQIEGHIPVEIANLKQLQILNLSSNSLSGQIPLELGNLKRLEELYLSNNSLAGTIPYTLGNLQQLQILNLSSNSLSGQIPLEIGALASLQQLNIDFNQINGSIPLEFQNLIMLTTLNLSHNMISGVIPPKLFQLTKLASLHLSNNQLAGNIPSEIGIPDSLCDVNLSYNKLEGLIPFPILNCGTFGEADLSNNLLSGNIPSKIGNVVKFDISHNLHSGSVPFLFITEGSYTPGNKLFLTSLDLSYNNFTGTLPIELADIPHINLSFNSFECPQAFKGFHAESLIGNTPKCNVTSFVQVQKTKSPKNLIVIALPVTCCFLLIIFVGIFCYIRRTKKVKFEQCSEKNGDLFSIWNYDGKIAFEDIIQATHDFDIRYCIGTGGYGSVYRAQLPSGKIVALKKLHQRESQNPSFDRSFRNEVKMLSQIRHRNIVKLHGFCLHNRCMFLVYEYMERGSLFYALSIDDEAKELTWSKRVHIISGTANALAYMHHDCSPPIVHRDVTSNNILLNSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTMRVTEKCDVYSFGVVALETLMGMHPKELILSLLDSCHNKNIMVKDLLDSRIRIPLCQRDTEAIVHVLKLALACLRSNPKSRPSMQQVAYELSTSKQSLPLPFAEITVHQLIA 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90874g00010 886 PANTHER LEUCINE RICH REPEAT KINASE 2 82 167 - -
Stsc90874g00010 886 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Stsc90874g00010 886 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515
Stsc90874g00010 886 FunFam Leucine-rich repeat receptor protein kinase MSP1 559 675 - -
Stsc90874g00010 886 Gene3D Ribonuclease Inhibitor 169 243 IPR032675 -
Stsc90874g00010 886 ProSitePatterns Tyrosine protein kinases specific active-site signature. 721 733 IPR008266 GO:0004672|GO:0006468
Stsc90874g00010 886 Gene3D Ribonuclease Inhibitor 244 524 IPR032675 -
Stsc90874g00010 886 FunFam Nuclear pore complex protein NUP107 188 283 - -
Stsc90874g00010 886 SMART LRR_typ_2 265 288 IPR003591 -
Stsc90874g00010 886 SMART LRR_typ_2 193 217 IPR003591 -
Stsc90874g00010 886 SMART LRR_typ_2 144 168 IPR003591 -
Stsc90874g00010 886 SMART LRR_typ_2 337 361 IPR003591 -
Stsc90874g00010 886 SMART LRR_typ_2 289 313 IPR003591 -
Stsc90874g00010 886 SMART LRR_typ_2 241 264 IPR003591 -
Stsc90874g00010 886 SMART LRR_typ_2 120 143 IPR003591 -
Stsc90874g00010 886 Pfam Protein kinase domain 602 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90874g00010 886 FunFam Piriformospora indica-insensitive protein 2 284 380 - -
Stsc90874g00010 886 FunFam Nuclear pore complex protein NUP107 30 187 - -
Stsc90874g00010 886 Pfam Leucine Rich repeat 464 477 IPR001611 GO:0005515
Stsc90874g00010 886 FunFam MDIS1-interacting receptor like kinase 2 676 871 - -
Stsc90874g00010 886 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515
Stsc90874g00010 886 Gene3D Phosphorylase Kinase; domain 1 558 675 - -
Stsc90874g00010 886 Gene3D Transferase(Phosphotransferase) domain 1 676 873 - -
Stsc90874g00010 886 SUPERFAMILY Protein kinase-like (PK-like) 583 864 IPR011009 -
Stsc90874g00010 886 ProSiteProfiles Protein kinase domain profile. 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90874g00010 886 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Stsc90874g00010 886 Gene3D Ribonuclease Inhibitor 31 168 IPR032675 -
Stsc90874g00010 886 SMART LRR_sd22_2 217 243 - -
Stsc90874g00010 886 SMART LRR_sd22_2 193 208 - -
Stsc90874g00010 886 SMART LRR_sd22_2 265 291 - -
Stsc90874g00010 886 SMART LRR_sd22_2 120 146 - -
Stsc90874g00010 886 CDD STKc_IRAK 603 865 - -
Stsc90874g00010 886 SUPERFAMILY RNI-like 101 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90874g00010 Stsc-Chr90874 44275 47076 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90874g00010 62 769 Receptor kinase-like Gene Family AT4G08850 36.988 1.61e-149 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90874g00010 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90874g00010 - - aprc:113851126 842.802