Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90874g00007 ATGTTTTTGGTTTATGAATACATGGAAAGAGGAAGCCTATTTTATGCATTGAGCATTGATGATGAAGCTAGGGAGCTAAGTTGGAGCCAAAGGGTGAATATACTTAGCGGAACGGCGAATGCTTTGTCTTACATGCATCATGATTGTTACCCGCCAATAGTTCACAGAGATGTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCATGCTGTCTCAGACTTTGGAACTGCTAGACTTCTTGATCCGGATTCTTCAAATCAGACATTACAAGTTGGAACATATGGATACCTTGCACCAGAGTTGGCCTACACAATGAGAGTGACAGAAAAGTGTGATGTATACAGTTTTGGGGTGGTGGCAATGGAAACATTAATGGGAAGGCATCCAAAAGAGCTAATCTTGTCTTTGATGGACTCTTGTAACAACAAAAACATGATGGTAAAAGATCTCTTGGATTCACGCATCCGTATACCATTATGTCAAAGAGACACTGAAGCAATAGTTGAGGTGGTAAAATTGGCATTGGCAAGCTTGCGCTCTAATCCAAAGTCAAGACCATCAATGCAGCAAGTGGCTCACGAGCTTTCTAATCACAAACAATCATCACTTTCTTTGACTTTTTCTGAAATCACAGTTCATCAGTCGATAGCTTAA 657 0.4033 MFLVYEYMERGSLFYALSIDDEARELSWSQRVNILSGTANALSYMHHDCYPPIVHRDVTSSNILLNSELHAVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTMRVTEKCDVYSFGVVAMETLMGRHPKELILSLMDSCNNKNMMVKDLLDSRIRIPLCQRDTEAIVEVVKLALASLRSNPKSRPSMQQVAHELSNHKQSSLSLTFSEITVHQSIA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90874g00007 218 Gene3D Transferase(Phosphotransferase) domain 1 1 216 - -
Stsc90874g00007 218 PANTHER LEUCINE RICH REPEAT KINASE 2 1 201 - -
Stsc90874g00007 218 ProSitePatterns Tyrosine protein kinases specific active-site signature. 53 65 IPR008266 GO:0004672|GO:0006468
Stsc90874g00007 218 SUPERFAMILY Protein kinase-like (PK-like) 2 196 IPR011009 -
Stsc90874g00007 218 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90874g00007 218 FunFam MDIS1-interacting receptor like kinase 2 8 202 - -
Stsc90874g00007 218 Pfam Protein kinase domain 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90874g00007 Stsc-Chr90874 29818 30568 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90874g00007 2 198 Receptor kinase-like Gene Family AT1G72180 37.500 3.94e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90874g00007 Pkinase 4.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90874g00007 - - ahf:112752745 288.885