Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90874g00005 ATGGCTGCTGAACTTGTTGGAGGAGCTTTTCTCTCCTCTTTTCTCAATGTTCTCTTTGACCGGCTGTCCGATCCTGAGATCATCAACACTATGAGAGGAAAGAAGGTTGACCAGAAGCTGCTTCAAAGGCTGGAGAACATCCTGAATGTGGTTGAAGCTGCTCTGAATGATGCTGAGAAGAAACAGATCACTGACCCTGCTGTCAAGAGGTGGCTCGAAAATCTCCAAGATGCTGTCTATGATGCTGATGACTTGTTGGATGAAGTTGCCACCAAAGCTGCCACTCAGAAGGATCCGCCAGGTAACTTCCTCCTTAGCTTTCTCAATCTTCAAGATAGCGAGATGGTTACTAGGATTGAAGAAATCATCACGAGACTAGAAGCTATCGCAAAACACAAAGATATCCTTCATCTAGAAAAGATTGCAGCCAAGAACATGTCTGGGAGGATTCCATCAACCTCACTGGTTAAAAAATCTGACATATATGTTGGCAGGGACAAAGAGAGGGATGCCATAGTGAACTTGTTGTTAGATGATGCTAAAGATGGTGAGCTTTCTGTGATTCCCATCGTCGGCATGGGTGGGATAGGAAAAACTACTTTGGCTAAATTGGTTTACAATGATGACAAAGTGCAGCAAAAGTTTCATGTCAAGGCATGGGTTTGTGTTGGTGAGGAGGAATTTGATGTTCTTAAGGTGACAAAGGCTGTGATAGAGAAAACTTGTAGTCCTTGTGACTCTAATGATTTAGATACAGCTCAAAATCATTTGAAGAATGCGCTAGCGGGGAAGAACTTCTTGGTTGTTCTGGATGATGTATGGAGCAGTAATCGTGAGGCTTGGGGAACTTTTCTAAATCCTTTTGAATGTGGAAGTCAGGGAGGCAAGTTTCTTGTAACAACCCGGCTTGATGCAGTTGCTTCTGTGGTGAAAACTAAACACAATCAGGCTCATAATTTGAGTTTGTTGGATGAAGAACAGTGCTGGTCTGTGTTTGCAAATCGTGCATGGGATCTTGCTGAATCTCGAGATCCAGCTCTAGAGGAAATTGGCAGGAAAATTGTTAAAAAATGTAAAGGATTACCTTTGGCAGCTGAAGCTCTTGGAGGGTTATTGAGAGGGAAAGATGGTGAAAAAGATTGGAATGATGTGTTGAATAGTGAATTTTGGCAACTTTCTGAGGAGGATAGTAGGATTCTTCCGGCGCTGCGAATCAGTTATTACCATCTCCCTTCACATTTAAAACGCTGCTTTGTTTATTGTTCTTTGTATCCAAAGGACTATATATTTGATAGACATGAATTGATGTTACTGTGGATGGCAGAAGGTCTTTTGCAACAACCAAGGAGTGGAAAGATTTTAGAAGAAATTGGTTATGAATATTTTGATGATTTGGTTTCAAGATCATTTTTTCAGCATTATTCCAACTCTTATGATGAGGTTTTATTTAAAATGCACGATCTCATTCATGATTTAGCAACATTCTATGGTGGAAAGTTCTTTTCTAGAACCTTCGAACTCAAGAGTGCTGCCAAATATGATAACAAAGCTCATCATTTGTCGTATCTTCTGCACAACCATGATGCAATCTCAAAGATCTTGAAAGCATGTGGTAGTATGAAACATGTGAGGTCACTTTTGGGAATCAATTCTAGAAGATATGATGAATCCTCAGAGGGAACAATCGCTCCATATCACTTGCTAAAAAAATTGAAGTACTTACGAGTTTTGTCATATAAAGTTTTTTTAAATGATGAAAACTTGTTGTGCGATTCAATTGGCGAATTGATTCATTTGCGTTATTTAGATCTCTCTGAAACAACTGTCACAACGTTGCCGGAGTCAGTGAGTTTCTTGTACAATTTACAGACTTTGAAGTTGAGAGAGTGTAAAAATCTTAAAAAGCTTCCCACCAACATGCAAAATCTTGTGAATTTGCGTCATCTTGATATTGAATACACCGAAGTAGAAGATGTCATGGCCCAAATTCACCATCACTGGCGCTCAAGGACATGTTCCTCAGCAAGCCAATTAACCAAAATTTTCATAGAAAAACGGACAGAGTCTCCCCTAATTTTTGAACATTACCAAAATGAATACAAACTTCCTACTTAA 2115 0.3967 MAAELVGGAFLSSFLNVLFDRLSDPEIINTMRGKKVDQKLLQRLENILNVVEAALNDAEKKQITDPAVKRWLENLQDAVYDADDLLDEVATKAATQKDPPGNFLLSFLNLQDSEMVTRIEEIITRLEAIAKHKDILHLEKIAAKNMSGRIPSTSLVKKSDIYVGRDKERDAIVNLLLDDAKDGELSVIPIVGMGGIGKTTLAKLVYNDDKVQQKFHVKAWVCVGEEEFDVLKVTKAVIEKTCSPCDSNDLDTAQNHLKNALAGKNFLVVLDDVWSSNREAWGTFLNPFECGSQGGKFLVTTRLDAVASVVKTKHNQAHNLSLLDEEQCWSVFANRAWDLAESRDPALEEIGRKIVKKCKGLPLAAEALGGLLRGKDGEKDWNDVLNSEFWQLSEEDSRILPALRISYYHLPSHLKRCFVYCSLYPKDYIFDRHELMLLWMAEGLLQQPRSGKILEEIGYEYFDDLVSRSFFQHYSNSYDEVLFKMHDLIHDLATFYGGKFFSRTFELKSAAKYDNKAHHLSYLLHNHDAISKILKACGSMKHVRSLLGINSRRYDESSEGTIAPYHLLKKLKYLRVLSYKVFLNDENLLCDSIGELIHLRYLDLSETTVTTLPESVSFLYNLQTLKLRECKNLKKLPTNMQNLVNLRHLDIEYTEVEDVMAQIHHHWRSRTCSSASQLTKIFIEKRTESPLIFEHYQNEYKLPT 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90874g00005 704 PANTHER DISEASE RESISTANCE PROTEIN RP 55 662 IPR044974 GO:0006952
Stsc90874g00005 704 Gene3D - 19 133 - -
Stsc90874g00005 704 Pfam NB-ARC domain 167 387 IPR002182 GO:0043531
Stsc90874g00005 704 Coils Coil 41 61 - -
Stsc90874g00005 704 Pfam Rx N-terminal domain 10 100 IPR041118 -
Stsc90874g00005 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 421 IPR027417 -
Stsc90874g00005 704 Gene3D Ribonuclease Inhibitor 525 687 IPR032675 -
Stsc90874g00005 704 Gene3D - 401 494 IPR036388 -
Stsc90874g00005 704 Gene3D - 141 318 IPR027417 -
Stsc90874g00005 704 PRINTS Disease resistance protein signature 260 274 - -
Stsc90874g00005 704 PRINTS Disease resistance protein signature 187 202 - -
Stsc90874g00005 704 PRINTS Disease resistance protein signature 358 372 - -
Stsc90874g00005 704 PRINTS Disease resistance protein signature 617 633 - -
Stsc90874g00005 704 SUPERFAMILY L domain-like 484 658 - -
Stsc90874g00005 704 FunFam Probable disease resistance protein At1g63360 407 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90874g00005 Stsc-Chr90874 21932 24527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90874g00005 184 493 WRKY Transcription Factor Family AT5G45050 26.006 6.95e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90874g00005 - - ahf:112755913 1021.54