Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90874g00004 ATGCCAAAAGGGATGAGCAAATTACAAGATTTGCAATTTTTAAGTAACTATGTTGTGGGGAAGCATGAAGAGAATGGAGTTGGAGAATTGGGAGGACTAGCAAATCTTCATGGGTCATTGTGTATTGAGAAATTAGAGAATAAAGTGAGGATTGTGATTCCCAAACTGAAGGATGTACTTGACAAATTACATCCTCACAAAAACTTGAAAGAGCTAAGGATTTTTCGTTACAGAGGTACGATGTTTCCAGATTGGGTAGGACAGCCTTCATACAACAACATGACTACATTGGTGCTGAGGGGAGGCAGGAATTGTTGGGTTCTTCCTTCACTTGGACAGTTACCCTCTCTCAAGGTATTGTGGCTCGCAAGATTTGATATGGTGAAGAAGATTGGTGCTGAATTCTATAAGGCTGATGGAACTCATCATCATCATCAAGTGACACCCTTCCGATCCCTTAAATTTCTGGATATTTTTTATATGGGTTGCTTGGAGGAATGGGAGTCATTTGAATGTAGTGATGCTCATGCACCATTTCCTCAGCTTGAGACGCTTCAAATACAGTGTTGTCCTGAGTTAAGAGGAGATTTGCCCACTTTCCTTCCGTCTTTGAAACAACTTATCATGGCAGATTGCTCACAGCTTAGTTGTTATCTGCCAAGAGCTCCCATCATACGTGACTTAAGCATATGTGGCAAGCAAGCAAAAATACAGGAGCTACCACTTTCCATGTTGGAGACACTACGGGTTAATGGCGAGCAGCAGGTGAAGTATGTGTTTGATGCCATGACTCGCACCCAACCAGCCTCTCTCACAGAGTTAACCATCTCAGACTGCTCATCAGCATCTCTTGAGGAGGTGTCACAGTTAAAGTCCCTCCGATTTTTATCAATTGTAATGTGTCCTAAGCTGCACAGCATAAGGGTGCCTGCCTCTTTAAGGGAGCTCAGAATCATTGATTGTCCGTTGTTTGCAATGACTCAACATCTTAAAAAAGGTAACTGTTATGCTAGACTTCTTGATACTGATTCTTCAAATCAGACATTACAGGTTGGAACATATGGACACCTTGCACCAGAGTTGGCCCACACAATGAGAGTGACAGAAAAGCGTGATGTATACAGTTTTGGAGTGGTGGCATTGGAGATACTAATGGGAAAGCATCCAAAAGAGCTAATCTTGTCTTTGTTGGACTCATCTAACAAAAACATAATGGTAAAAGATCTCTTGGATTCGCGCATCCGTTTACCATTATGTCAAAGTGACACTGAAGCAATAGTTGAGGTGGTAAAACAGTCACTGCCTTTTCATTTTGCTGAGATTACAGTTCATCAGTTGATAGCTTAA 1347 0.4165 MPKGMSKLQDLQFLSNYVVGKHEENGVGELGGLANLHGSLCIEKLENKVRIVIPKLKDVLDKLHPHKNLKELRIFRYRGTMFPDWVGQPSYNNMTTLVLRGGRNCWVLPSLGQLPSLKVLWLARFDMVKKIGAEFYKADGTHHHHQVTPFRSLKFLDIFYMGCLEEWESFECSDAHAPFPQLETLQIQCCPELRGDLPTFLPSLKQLIMADCSQLSCYLPRAPIIRDLSICGKQAKIQELPLSMLETLRVNGEQQVKYVFDAMTRTQPASLTELTISDCSSASLEEVSQLKSLRFLSIVMCPKLHSIRVPASLRELRIIDCPLFAMTQHLKKGNCYARLLDTDSSNQTLQVGTYGHLAPELAHTMRVTEKRDVYSFGVVALEILMGKHPKELILSLLDSSNKNIMVKDLLDSRIRLPLCQSDTEAIVEVVKQSLPFHFAEITVHQLIA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90874g00004 448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 1 323 - -
Stsc90874g00004 448 Pfam Protein tyrosine and serine/threonine kinase 351 433 IPR001245 GO:0004672|GO:0006468
Stsc90874g00004 448 Gene3D Ribonuclease Inhibitor 1 217 IPR032675 -
Stsc90874g00004 448 SUPERFAMILY Protein kinase-like (PK-like) 337 415 IPR011009 -
Stsc90874g00004 448 SUPERFAMILY L domain-like 6 324 - -
Stsc90874g00004 448 Gene3D Transferase(Phosphotransferase) domain 1 315 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90874g00004 Stsc-Chr90874 19246 20856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90874g00004 345 389 Receptor kinase-like Gene Family AT4G26540 57.778 1.95e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90874g00004 PK_Tyr_Ser-Thr 3.5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90874g00004 - - aip:107626171 372.089