Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90874g00003 ATGGTAAAGTGTAGTAGTAGTAATAGTAGTAGCTGTACTTTGCTTGCAGTGGTGGTGCTTCTCTTCATATCCACCCTTTTGGCTTCTTCTTCCTCCAATAATTCTGAGAAACAGGCTTTAATTCAGAGCGGTTGGTGGAGCCATGACCACAATATCTCAAACCATTGCTACTGGACAGGCATCATCTGTGACTATTCTGGAAGTGTTTCAGAGATTGATGGATGGGACTTGAATGTTAATTCCAAATCATTGCAGCTACAGAACTTGAATCTCACTGCCTTCCCCAACTTGGTCTATCTTGATCTTCGCCGAATGGGACTTACAGGAACCATCCCTAAAGAAATTGGTACTCTCAAAAAGCTTAAACGTCTTTACCTATTCGATAACAATCTTCATGGTGAGCTTCCTCCAACTCTTTCAAATCTTACACAGCTTCAGAACCTTGATGTTTCAGGAAACTCTCTTAGTGGCATCATTCCTTCTACTTTTCATCAACTGCAGAATAATTTGAACTCTATATCTCTTGCTTCAAACCAGATTAATGGTTCTATTCCATCAATTTTCACAAATTTTTCCCATCTAACATACTTAAATCTTTCACATAACAAGTTGTCTGGTGTTATTCCTTCCCAGATTTTTCTACTAACCAACTTGGATTATTTGCTTCTCTCATCAAATCAATTTTCTGGTCCAATGCCACCAAATATTGCAAACACAAGTATCTGGCATATAGATATCTCTCATAATCAACTAACAGGACCTACTCTATTTCCTATCCACAATTGTTTTTCTCCTGTAACACTAGATTTAAGTTACAACCACTTGAATGGAAGCATTGTTTCGCAGACTGGTTGTGTGGTTAAGCTTAACCTTAGTCATAATTTTATCAAAGGTGACATCACATTTAGCTTTGGAGTGAATTCCATGATGGAGAGTTTGGATCTGAGTTATAATAATTTCACAGGAAAACTGCACAAGGAGCTTGCTAATCTTAGATACATAAACCTTTCATACAATTCCCTTGACTTTTCTCAAGACACTGATTATTGTTACTTTCAACAAGAGTCATTAATTGGTTGCAACACACCAAGCTTCAAATCCTGTCAAAAAAGTAAGAGCAAGCACCTCCTTGTAATAACTCTTCCTATAACCTGCATAATTCTTTTCAGTATTCTAGTGATAATACTTTTTGTAAGACGCACCAAAAGTAAGAAAATTGAGGAAAGAACAGCAAAAAATGGAGACTTGTTTTCTATTTGGAACTATGATGGGAAAATTGCATTTGAAGATATCATTGAAGCAACACAGGACTTTGATATCAGATACTGCATTGGAACTGGTGCTTATGGTAGCGTGTACAAAGTGCAACTTCCAAGTGGCAAAGTTGTTGCGTTGAAGAAACTTCACCAAATGGAGTCTCAAAATCCATCTTTTGACAAGAGCTTCCGCAACGAGGTAAAGATGTTATCACAAATCATTCATAGAAACATTGTCAAGCTTCATGGGTTTTGTCTCCACAACCGGTGCATGTTTTTGGTATATGAATACATGGAAAGAGGAAGCTTATTTTATGCATTGAGCATTGATGATGAAGCTAAGGAGCTAAGTTGGAGCCAAAGGGTGAATATACTTAGCGGAACGGCGAATGCTTTGTCTTACATGCATCATGATTGTTACCCACCAATAGTTCACAGAGATGTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGAACTGCTAGACTCCTTGATCCTGATTCTTCAAATCAGACATTACAAGTTGGAACATATGGATACCTTGCACCAGAGTTGGCCTACACAATGACAGTGACAGAAAAGTGTGATGTTTATAGTTTTGGAGTGGTGGCATTGGAAACATTATTGGGAAGACATCCAAAAGAGCTAATCTTGTCTTTGTTGGACTCTTGTAACAACAAAAACATAATGGTGAAAGATCTCTTGGATTCACGGATTCCTCTACCTTCATGTCAAAAAGATGTTGATGCTATAGTTCATGTGGTAACGCTGGCCTTGGCATGCTTGCATTCTAATCCAAAGTTAAGACCATCAATGCAGCAAGTGGCTCATGAGCTTTCTACTTCTAAACAGCCACTGCCTTTGCCTTTTGATGAAATTACAGTTCATCAATTGATAGCTTAA 2184 0.38 MVKCSSSNSSSCTLLAVVVLLFISTLLASSSSNNSEKQALIQSGWWSHDHNISNHCYWTGIICDYSGSVSEIDGWDLNVNSKSLQLQNLNLTAFPNLVYLDLRRMGLTGTIPKEIGTLKKLKRLYLFDNNLHGELPPTLSNLTQLQNLDVSGNSLSGIIPSTFHQLQNNLNSISLASNQINGSIPSIFTNFSHLTYLNLSHNKLSGVIPSQIFLLTNLDYLLLSSNQFSGPMPPNIANTSIWHIDISHNQLTGPTLFPIHNCFSPVTLDLSYNHLNGSIVSQTGCVVKLNLSHNFIKGDITFSFGVNSMMESLDLSYNNFTGKLHKELANLRYINLSYNSLDFSQDTDYCYFQQESLIGCNTPSFKSCQKSKSKHLLVITLPITCIILFSILVIILFVRRTKSKKIEERTAKNGDLFSIWNYDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYKVQLPSGKVVALKKLHQMESQNPSFDKSFRNEVKMLSQIIHRNIVKLHGFCLHNRCMFLVYEYMERGSLFYALSIDDEAKELSWSQRVNILSGTANALSYMHHDCYPPIVHRDVTSSNILLNSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTMTVTEKCDVYSFGVVALETLLGRHPKELILSLLDSCNNKNIMVKDLLDSRIPLPSCQKDVDAIVHVVTLALACLHSNPKLRPSMQQVAHELSTSKQPLPLPFDEITVHQLIA 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90874g00003 727 Gene3D Phosphorylase Kinase; domain 1 398 516 - -
Stsc90874g00003 727 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 169 708 - -
Stsc90874g00003 727 SUPERFAMILY L domain-like 45 342 - -
Stsc90874g00003 727 PRINTS Leucine-rich repeat signature 194 207 - -
Stsc90874g00003 727 PRINTS Leucine-rich repeat signature 328 341 - -
Stsc90874g00003 727 Gene3D Transferase(Phosphotransferase) domain 1 517 713 - -
Stsc90874g00003 727 SUPERFAMILY Protein kinase-like (PK-like) 422 706 IPR011009 -
Stsc90874g00003 727 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 165 255 - -
Stsc90874g00003 727 Gene3D Ribonuclease Inhibitor 24 170 IPR032675 -
Stsc90874g00003 727 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Stsc90874g00003 727 ProSitePatterns Tyrosine protein kinases specific active-site signature. 562 574 IPR008266 GO:0004672|GO:0006468
Stsc90874g00003 727 SMART LRR_typ_2 328 351 IPR003591 -
Stsc90874g00003 727 SMART LRR_typ_2 191 215 IPR003591 -
Stsc90874g00003 727 SMART LRR_typ_2 142 165 IPR003591 -
Stsc90874g00003 727 SMART LRR_typ_2 118 141 IPR003591 -
Stsc90874g00003 727 CDD STKc_IRAK 444 706 - -
Stsc90874g00003 727 FunFam Leucine-rich repeat receptor protein kinase MSP1 401 516 - -
Stsc90874g00003 727 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 88 164 - -
Stsc90874g00003 727 ProSitePatterns Protein kinases ATP-binding region signature. 444 466 IPR017441 GO:0005524
Stsc90874g00003 727 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Stsc90874g00003 727 Gene3D Ribonuclease Inhibitor 171 365 IPR032675 -
Stsc90874g00003 727 Pfam Leucine Rich repeat 307 322 IPR001611 GO:0005515
Stsc90874g00003 727 ProSiteProfiles Leucine-rich repeat profile. 193 215 IPR001611 GO:0005515
Stsc90874g00003 727 ProSiteProfiles Protein kinase domain profile. 438 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90874g00003 727 Pfam Protein kinase domain 443 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90874g00003 727 FunFam MDIS1-interacting receptor like kinase 2 517 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90874g00003 Stsc-Chr90874 16152 18429 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90874g00003 97 610 Receptor kinase-like Gene Family AT4G08850 39.962 9.30e-114 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90874g00003 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90874g00003 - - aprc:113851126 739.569