Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90873g00007 ATGTCATCAAACCATGGACGTGGCCACCATCCCCGCTCAATTTGGAGCAAGCTATGTTTCTCTAACCCAAGTTGGGATTCAGATGATGATGATGATTTCGAATTAGATACTATATTCTATGTTTATTGTCCAGCGCCATCTGTTGAAATTCATCAACCACCACCACCACCAGAACCTGAACCTCAACCTGAATATGACTTGGAATTTTTATCCCAACTGCTGCCACCTCCGCCGCCACCACCACCACTGATGCCTTCTTCGGTTGTTCATGGCAGGAGGATGGATATTGAACCAGTCAGAAGCATTGGGCTGATTGACATCTTTTCTGAGCAACAGAGGGACCAACTATCTAACTGCCCAATCTGTACGGACGAGTTTGAAATGGGAGAGATTGTGTGCATGCTGCCCTGCAACCATGCCTTCCATTTTTCCTGCATCAATCGCTGGCTGGAAACTAGTCTTACCTGCCCAGTTTGCCGGCAGGAGTTGGGTAACAATGTTTCTCCTTGCGACATCTGGCGAGACTATTTCTCGCGGCACGGGGAAGAATTTGAAGCATTTAGCAGAGCTGCGAGTGATGAAAACTCAGAGGAAGATGAGCAGTATGACAGTGCAAACGATGAGATTGATGATGATTTCATTATGGAGAGAATTCGGATACTACTGTAG 669 0.4649 MSSNHGRGHHPRSIWSKLCFSNPSWDSDDDDDFELDTIFYVYCPAPSVEIHQPPPPPEPEPQPEYDLEFLSQLLPPPPPPPPLMPSSVVHGRRMDIEPVRSIGLIDIFSEQQRDQLSNCPICTDEFEMGEIVCMLPCNHAFHFSCINRWLETSLTCPVCRQELGNNVSPCDIWRDYFSRHGEEFEAFSRAASDENSEEDEQYDSANDEIDDDFIMERIRILL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90873g00007 222 SMART ring_2 119 159 IPR001841 -
Stsc90873g00007 222 MobiDBLite consensus disorder prediction 188 208 - -
Stsc90873g00007 222 SUPERFAMILY RING/U-box 118 168 - -
Stsc90873g00007 222 CDD RING-H2_PA-TM-RING 119 160 - -
Stsc90873g00007 222 Coils Coil 188 208 - -
Stsc90873g00007 222 Pfam Ring finger domain 118 160 IPR001841 -
Stsc90873g00007 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 166 IPR013083 -
Stsc90873g00007 222 PANTHER SI:CH211-59O9.10 109 163 - -
Stsc90873g00007 222 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90873g00007 Stsc-Chr90873 54295 55701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90873g00007 107 163 C3H Transcription Factor Family AT1G14200 36.842 1.64e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90873g00007 K11982 - tpra:123908673 83.9593