Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90872g00010 ATGGTAGTGGTGGATCAGCAAAAGCACCAGCATCACCACCACCACCACCATGGATCCTCCTTAGTCATCAAAAGGATCAAGAGGGAGCAATGCCCCCACACCAAACATGATTCTAACTTCTACAAATGGAAGATTTTGGTTGGTGCTACTGATTGGGAAGATCATTCAAAGGGAAAAGAAGGATGTTCAAGATACAGGATCCATAATCTGCCAGAAAAATCATGTCCAGGAGTATATGAACTTGGAATAGCTGTGTCATCAAGCAGTGGTTCGGGGAGGGAAATTTACAAACTTGCCCCTGAGCGGATAGTTGTGGCTTACCTTGGTGAAACTGATAATATAAGGAAAAGATTACAACGCTATGGAAGCCATGGATCTCATTTGCACAATAACACCTCTGTTGAATACTCAAGTTATGATTCTCTGCAAACCAAGAGGCCATTGTTTGAGGAGATTTTTTCACTGGGCTACCCCATTGTTTATAGATGGGCTCCTATGAATAGCAAAGAAGAGGCCAAGTTAATAGAAGTTCAGCTGCTCAAAACATTTGATTATGCATGGAACACAACCTATAATGGTCACCCACGGCCCAACGATATTCTTCAAAGGCTAAACAAGATTTCTTCCGGCACAAGAACAATCTCAGATATGGTCAGGGAGCTCTTACCTTTACCTCGAAAACAAGTTGGTATCCGAATCAAATCGAGCAAGCTGCCTCAACAAGATGAAGAAGAAGACAACGATGGCAGCTACAGTTTCCTACCTAGGGTGTCCAAATTCAACAAATCTCGGCCTAGGAAAGTCGAAAATATCGCCAGTGCCATCCAGGAGAATGCTATAATTTGTGGGGTGGCTTTAGGTGATGGTTCTGTCTGTACAAATGCACCAGTTGAAAGAAGAAAGAGGTGTCCTCAACACAAAGGAATGAGAATTAATAATGCATCTCCTGCCAAAGCATTAGTTTCACCAAAATCAAAGAGCATTTTGGTTTCAGAAATCAGTAAGTTTATGGGCCAAAATGCCAGCAATGATAATGCAGAAGACTTTCCAAAAAAACCGGTTGAAGTGAGTAGTAATAGCACCAATATATGTGGAATCATATTGTATGACGGTTCACCTTGTAGAAGGGTACCAGTAAAAGGGAGAAAAAGGTGCCAAGAACACAAAGGAAAGAAAATTCGTGCCTCTATTATTCATATGAATAAGCAATTGGAGGGTCCAATTTCTATATAG 1233 0.4136 MVVVDQQKHQHHHHHHHGSSLVIKRIKREQCPHTKHDSNFYKWKILVGATDWEDHSKGKEGCSRYRIHNLPEKSCPGVYELGIAVSSSSGSGREIYKLAPERIVVAYLGETDNIRKRLQRYGSHGSHLHNNTSVEYSSYDSLQTKRPLFEEIFSLGYPIVYRWAPMNSKEEAKLIEVQLLKTFDYAWNTTYNGHPRPNDILQRLNKISSGTRTISDMVRELLPLPRKQVGIRIKSSKLPQQDEEEDNDGSYSFLPRVSKFNKSRPRKVENIASAIQENAIICGVALGDGSVCTNAPVERRKRCPQHKGMRINNASPAKALVSPKSKSILVSEISKFMGQNASNDNAEDFPKKPVEVSSNSTNICGIILYDGSPCRRVPVKGRKRCQEHKGKKIRASIIHMNKQLEGPISI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90872g00010 410 MobiDBLite consensus disorder prediction 8 22 - -
Stsc90872g00010 410 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 347 398 IPR038909 GO:0003677|GO:0006355
Stsc90872g00010 410 MobiDBLite consensus disorder prediction 1 22 - -
Stsc90872g00010 410 SMART uri_9 89 193 IPR000305 -
Stsc90872g00010 410 Pfam GIY-YIG domain-containing protein 40 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90872g00010 Stsc-Chr90872 52099 54153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90872g00010 20 402 HRT Transcription Factor Family AT5G56780 41.310 1.08e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Stsc90872g00010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90872g00010 - - adu:107490117 603.208