Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90870g00011 ATGATACTTGATGCTTGTGACCTGCACTGGGATAATGGCTTTGGAGTTCTAATGGATAAGTCTCTCCTCACTATGCAACTGAACAAGCTTTGGATGCATGATCTGCTACAGGAAATGGGTAAAGAAATTGTGCGCCAAGAATCTCCTGAAGATCCTGGTAAACGTAGCAGACTATGGTTTCACGAGGATGTGCTTCATGTATTGAACCAAAACACGGGAACTAACAACATTGAAGGCATAAAGCTTGATCTACCTAAACCCGATAACATAAATGGCAATGCCCTGGCAAAGATAAAAAGACTTAAGAATGACATTCAATATCTTTCTGACGAGCTGAGACTAATCGATTGGCCAGGATACCCGTCTTCAACTCTACCACAAAATTTCCATACAAGAAGACTAGTTTCCTTAAATATGAGACATAGCCACATCAAACATTTGTGGAAGGGAGCAAAGATATTCAGAGACTTGAAACTTGTGTCCTTTAGCAGCTGTGAACACCTTCAAGAAATTCCAGACTTCTCAATGGTTCCAAACCTTGAAAGCCTAAGCCTAGACAACTGTAGAAGTTTAATTAAGGTGCATGAGTCTGTGGGAGCTCTGGATAAGCTTGTTACTTTAAACCTTCTATTTTGCTCCAATCTCAAGATCATTCCAAGTCGTTTCATGCTAAAATCACTTCGTACTCTCCTCCTCACTGGCTGCTCAAAACTAAGAAAGTTTCCTGAGATTGTGGGGAATATGGAACATCTTGAAAAAATTCTTCTCCAAGAAACAGCAATAAAAGAACTACCTCAGTCGATTGAATATCTAAGTGGGCTGAAGTTCTTATACTTGGAGTCTTGCCAAAATCTAGAGCATCTCCCCAGCAGCCTTCAGAAGTTGCAACAGCTTACTATTCTTAGTCTCAGTGGCTGCTCTAAGCTTCAGAAGCTTCCAAGGCTTCCCCTAAATATAAGATTTATATACTTGAGTGATTGTAGATCTTTGACAAGCTTTCCTACATTATCCAGCCCATCAAATTTCATTGCAGAGGATTTTCCGAGTTGTATTCCAGGGAGCAAGATCCCAGATTGGCTTCAATACCAGAGTGCTAATGATTCCATTTATGTTGATGTTTCTTCTAGTTTGTATGGTAAGCCCATGGAGGCATTTTTTGGCGCAGTTTTTGAGTTGAATAAAGGTGCTACTACAACTGGCATTTTTACAGCTGAATTTGCTGTTATTGTCAATGGAATTAAGACAATTATTTCTGCAAGCCATTTCGAAGCACTGAAATCAAGTCATGTGTGGTTAGCTCGGTTGAAACCTGATCATTTCATGTGGCACCTTAGAAGTATGCATCATTGGAATCACTTTCAGATTTCATTTTCGATATTAGAAACTTCATCAAAGCAGAAGATAGGAGCAACCTTGAAGAGTTGTGGTTTCCATATTCAGTGCAATCAAGAAGGGTATGTGATTGATCATACAACAGTTAGGAAGTCCAGAGGACTTACTTGTGCTTCCACCACTTCCAACATCGGCACCAGGACTTCCGGCTCCGGTTATCGGAATTATTATTTTTCTGCAGCTGTGGATTCTGTCACTGCCGATGAAGAAGAAGAAGGGAGCGATCGAGAAGTGGAAGATGCAATGGTGGAATTAGACACAAAGCATCATAAGCCTCAGTTCAAGAAAACAATGAAGGTTACAATGATTCAGTTCCTTCCACTATGCACCTTCCTCTTATTAGCCTTCAACACACACCCTTTGCTGGCAGCAGATCCAGAACCAGTTGTGGACAAACAACAAGAGCCATTGCAGCCAGGAGTTGGTTACTATGTATGGCCACTTTGGGAAGACAATGGTGGCATAACACTAGGCCACACAAGGAACAAGACATGCCCTCTTGATGTTATCCGTGACCCTTCATTCATAGGCTCACCGGTGACCTTCAGGGCGCCGGGACTCGACTATGTCCCTACAGAAACCGATCTAACCATTGATTTTGCAGTGAAGACCACCTGCAATGAGCCTACAGTGTGGAGACTCTTGAAGGAAGGTTCCGGTTTCTGGTTCTTGAGCACCGGTGGCGATTCTCAGTCACTTGTTAGTAAGTTCAAGATTGAGAGGCTTGCAGGGGACCATGCATATGAGATTTACAGCTTCAAGTTTTGTCCCTCACAGCCTGGTGTTATCTGTGCTCCTGTGGGGACCTTTGTGGATGCTGATGGAACCAGAGTTATGGCCATTGGTGACAACATTGACACATACTATGTTAGGTTCCAGAAGGTTTCTACTTATGTTCAGGAGAAGAACCCAGCTTTTAGCATTGTGTAA 2322 0.4229 MILDACDLHWDNGFGVLMDKSLLTMQLNKLWMHDLLQEMGKEIVRQESPEDPGKRSRLWFHEDVLHVLNQNTGTNNIEGIKLDLPKPDNINGNALAKIKRLKNDIQYLSDELRLIDWPGYPSSTLPQNFHTRRLVSLNMRHSHIKHLWKGAKIFRDLKLVSFSSCEHLQEIPDFSMVPNLESLSLDNCRSLIKVHESVGALDKLVTLNLLFCSNLKIIPSRFMLKSLRTLLLTGCSKLRKFPEIVGNMEHLEKILLQETAIKELPQSIEYLSGLKFLYLESCQNLEHLPSSLQKLQQLTILSLSGCSKLQKLPRLPLNIRFIYLSDCRSLTSFPTLSSPSNFIAEDFPSCIPGSKIPDWLQYQSANDSIYVDVSSSLYGKPMEAFFGAVFELNKGATTTGIFTAEFAVIVNGIKTIISASHFEALKSSHVWLARLKPDHFMWHLRSMHHWNHFQISFSILETSSKQKIGATLKSCGFHIQCNQEGYVIDHTTVRKSRGLTCASTTSNIGTRTSGSGYRNYYFSAAVDSVTADEEEEGSDREVEDAMVELDTKHHKPQFKKTMKVTMIQFLPLCTFLLLAFNTHPLLAADPEPVVDKQQEPLQPGVGYYVWPLWEDNGGITLGHTRNKTCPLDVIRDPSFIGSPVTFRAPGLDYVPTETDLTIDFAVKTTCNEPTVWRLLKEGSGFWFLSTGGDSQSLVSKFKIERLAGDHAYEIYSFKFCPSQPGVICAPVGTFVDADGTRVMAIGDNIDTYYVRFQKVSTYVQEKNPAFSIV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90870g00011 773 Gene3D Ribonuclease Inhibitor 222 355 IPR032675 -
Stsc90870g00011 773 Gene3D Ribonuclease Inhibitor 65 221 IPR032675 -
Stsc90870g00011 773 SMART kul_2 592 760 IPR002160 GO:0004866
Stsc90870g00011 773 Coils Coil 91 111 - -
Stsc90870g00011 773 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 325 IPR044974 GO:0006952
Stsc90870g00011 773 Pfam Trypsin and protease inhibitor 593 758 IPR002160 GO:0004866
Stsc90870g00011 773 SUPERFAMILY L domain-like 31 341 - -
Stsc90870g00011 773 SUPERFAMILY "Winged helix" DNA-binding domain 10 68 IPR036390 -
Stsc90870g00011 773 SUPERFAMILY STI-like 591 759 IPR011065 -
Stsc90870g00011 773 CDD STI 592 758 IPR002160 GO:0004866
Stsc90870g00011 773 Gene3D - 583 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90870g00011 Stsc-Chr90870 61226 65737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90870g00011 1 325 WRKY Transcription Factor Family AT4G12020 40.449 3.39e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90870g00011 - - ahf:112749316 715.687