Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90870g00008 ATGGATCTGCAATCTCCTTTCTTCTCTACTCATTCCTTCAACTTTGACCATGTATTGAAATACGATGTGTTTATTAGCTTTAGAGGCCAAGACACTCGCTACGGTTTCACTGGCAATCTTTACAATGCTCTTTGTCACAAAGGAATCCATGCCTTCATTGATGATGAGGAGCTTCAAGGGGGAGACGAAATTACTCCCTCACTTCTCAGTGCAATTCAAGAGTCTAGGATTGCCATCATTGTCCTCTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTAGATGAGCTTGTCCACATCCTTAACTGCATTAAGGGAAACAATCGGTTGGTGTTGCCAGTTTTCTTTGAGGTGGATCCTTCTGATGTGCGCCATCAAAGAAACAGTTTCGGAGAAGCAATGGCTAAGCATGAGAAGAGATTCAAGGATGACATGAACAAGGTGCAAAAATGGAAGGAGGCTCTGCATCAAGTAGCTAATTTGTCTGGCTATCATTTCAAACATGGGGATGGATATGAGCACATGTTTATTGGAAACATTGTGGAAAACATCTCAAAAAGGATTAGACGGCATGGAGCATTGCCTGTTGCTGATCACCTAGTTGGATTGGAGTCCGCAGTGTCAGCGGTAGCTTCACTTCTAGATGTTGAATCTAATGCTGGTGTTCACATGGTAGGGATATATGGAATTGGTGGAATAGGTAAAACAACACTTGCTGTTGTTGTTTTTAACTTGATTGCTGACAATTTTGAAGGCGCGTGTTTTCTTGAAAATGTGAGAGAAAATTCAAATAAACATGGGTTAGTACATCTTCAAAGTATCCTTCTTTGTAAGACACTAGGGAAGGAAGGCATCCAGATAGCAGGTGTTAGAGAAGGGGCTTCACAGATACGACATAGACTCCACAAAAAGAAAGTTCTTTTAGTTCTGGATGATGTTGATGAGTATGAGCAGTTGACAGCTATTGCTGAAAAACCTGATTGGTTTGGTCCTGGCAGCAGAATCATTATTACAACACGGGACAAACATTTGCTGACATTTCATGGCGTTGAAAGGACATATGAGGTACGAGGTTTAAATAAGGAAGAGTCCTTAGATTTGCTTGTTTGGAAAGCTTTCAGAAAAGATATTGATGACCCAAGCGCTCCTAAATATCTTCCAAACAGTTTAAGAGTATTGGAATGGTGGGGATATCCTTCAAAGGATTTACCGTATGATTTTCAACCAAAGGAACTCTCCATACTCAAGTTTCCTCATAGTCTCTGTATGACACCCATGTTGAATAGCTTAACTAAGGAGTTGGTCTCCTTGAATGTTTTGAATTTTGATTACAGTTATTCTTTGAAAGAGATACCCGATGTGTCTAGTCTTCAAAGTTTACAAGAGTTATCTTTCAAAGAATGTAGCAATTTAATTGAAGTTCACAATTCAGTTGGTTTTCTACCTAGACTTAAAATATTGAATGCTTATGGTTGCCGCAAGCTCAGGAGTTTTCCAACTACAAACACACTGCCCTTATTGGAAGATCTTCGTCTTTGTTTTTGCTCAAGCCTTGAAAATTTTCCAGAAATTCCAAAAGAGATGAAACATCTCCAAGTGCTTTATTTGCATGCCACTGGCATAAAAGATTTGCCATGTTCATTTCGTAACCTTTCTGGGTTGGAGTATCTGAAAATGGCTTGGAATGAAATGTGTGAGATGCCAAGTGTCATTGGCATGATGCCACAGCTGACTCGGTGTGAGATTGTGGGAGGAGGCAACGAGGGGAGGGTATCAGCAAAGCAGGAGAAGGGGCTTCATGGAATACTCACTCTCTCTCTCCCCTCATCAGATATGGAATATCTTCAACTCACAGACAGCAATTTGTCAGATGAGTTTTTTCAGCTAGCTGTTGAATGGTTTCCCAAAGTGGAACATCTTCGGGAGATTAGAGGGATTCCACCATGCTTGAGACACTTCTCAGCAGTAGATTGCAAATCCTTGAGTTCCAGGGGCACAAACTTGTTACTGAATCAGGAAGTGCACCAGAATGGGGGCACCAGGTTTGCAATGCCAGCAGAAAGGATTCCAAGGTGGTTTGAGGGTCGCAATAGGGGAGCTTCTATTTCTTTCTGGTTTCATGGCAACTGCTTCCCTTCCAGAGCTCTTTGCTTTGCAATTCTTCTAAAGGAAAAGCTGCCTTCCTCAATTAAACTAATACCCATCGTGACCATCAATGGCAACTATGTTTCCCGTGGCACACCACTTGAAATGGATCAATTCTGTATTTTTGATCTGAGGATGACAGATTGTTCTGTTACTTATGATGAATCACTACATTTTGAATACGAATGGAATCTTGTGGAGGTTTCATATGAAGCACGTGACTACTGTACCAACCGAGAGATCCCAAGTGAGTCAATTGCGAAAGAGATTGGAATGCACGTATCCAAGCAAGAGAGTAGTATCATGCAAGATATTCGATTCACTGATCCTTACGCAATGGCAGAACTGATTATAATGATGATGATGCTCTCAATGGTATTACCCAACCATAAGAAGCAGCCCTTGCTCCTTGAAACATGCATTGGTTTGTGGACATTGCTCTGTCTAACACACACACTCTGTATGAGCTACGATTGTGACGATTGGGAGGATTGA 2637 0.4126 MDLQSPFFSTHSFNFDHVLKYDVFISFRGQDTRYGFTGNLYNALCHKGIHAFIDDEELQGGDEITPSLLSAIQESRIAIIVLSPNYASSSFCLDELVHILNCIKGNNRLVLPVFFEVDPSDVRHQRNSFGEAMAKHEKRFKDDMNKVQKWKEALHQVANLSGYHFKHGDGYEHMFIGNIVENISKRIRRHGALPVADHLVGLESAVSAVASLLDVESNAGVHMVGIYGIGGIGKTTLAVVVFNLIADNFEGACFLENVRENSNKHGLVHLQSILLCKTLGKEGIQIAGVREGASQIRHRLHKKKVLLVLDDVDEYEQLTAIAEKPDWFGPGSRIIITTRDKHLLTFHGVERTYEVRGLNKEESLDLLVWKAFRKDIDDPSAPKYLPNSLRVLEWWGYPSKDLPYDFQPKELSILKFPHSLCMTPMLNSLTKELVSLNVLNFDYSYSLKEIPDVSSLQSLQELSFKECSNLIEVHNSVGFLPRLKILNAYGCRKLRSFPTTNTLPLLEDLRLCFCSSLENFPEIPKEMKHLQVLYLHATGIKDLPCSFRNLSGLEYLKMAWNEMCEMPSVIGMMPQLTRCEIVGGGNEGRVSAKQEKGLHGILTLSLPSSDMEYLQLTDSNLSDEFFQLAVEWFPKVEHLREIRGIPPCLRHFSAVDCKSLSSRGTNLLLNQEVHQNGGTRFAMPAERIPRWFEGRNRGASISFWFHGNCFPSRALCFAILLKEKLPSSIKLIPIVTINGNYVSRGTPLEMDQFCIFDLRMTDCSVTYDESLHFEYEWNLVEVSYEARDYCTNREIPSESIAKEIGMHVSKQESSIMQDIRFTDPYAMAELIIMMMMLSMVLPNHKKQPLLLETCIGLWTLLCLTHTLCMSYDCDDWED 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90870g00008 878 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 384 568 IPR044974 GO:0006952
Stsc90870g00008 878 Pfam NB-ARC domain 203 379 IPR002182 GO:0043531
Stsc90870g00008 878 Gene3D Ribonuclease Inhibitor 350 662 IPR032675 -
Stsc90870g00008 878 Gene3D - 188 349 IPR027417 -
Stsc90870g00008 878 SMART till_3 20 160 IPR000157 GO:0007165
Stsc90870g00008 878 Gene3D - 16 187 IPR035897 -
Stsc90870g00008 878 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Stsc90870g00008 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 393 IPR027417 -
Stsc90870g00008 878 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 163 IPR035897 -
Stsc90870g00008 878 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
Stsc90870g00008 878 PRINTS Disease resistance protein signature 299 313 - -
Stsc90870g00008 878 PRINTS Disease resistance protein signature 454 470 - -
Stsc90870g00008 878 PRINTS Disease resistance protein signature 223 238 - -
Stsc90870g00008 878 Pfam TIR domain 20 185 IPR000157 GO:0007165
Stsc90870g00008 878 SUPERFAMILY L domain-like 380 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90870g00008 Stsc-Chr90870 38034 41463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90870g00008 379 558 WRKY Transcription Factor Family AT4G12020 35.294 3.19e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90870g00008 - - ahf:112751488 588.571