Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90868g00006 ATGGAGGAACCACCTCCAGCCAAGCGCCCTAAAATTCTCAGGGGGGATGATGATTATATGCCTGGAAACATTCTTGAGATTGAGCTTTTTAAGTTCATGACCTTTGATCAATTTAAATGCAAACCTGGGCCTCGATTGAATCTTGTAGTTGGACCCAATGGTTCTGGAAAAAGTTCTCTTGTGTGTGCTATTGCACTTGGCCTCTGTGGAGAGCCACAGTTGCTTGGGCGAGCAACTAGTGTTGGGGCATATGTAAAGCGGGGAGAAGAGTCTGGATCCATTAAGATTACATTGAGAGGGAACAGCAAGGATGAGGTTATTGCCATTACTCGCAAAATAAATACTAACAACAAGTCTGAGTGGTTGTTAAATGGGAATATAGTTCCCAGAACTAATGTAGCTGAAACCGTTAAGAGGTTTAACATCCAAGTCAATAACTTGACACAATTTTTACCACAAGACAGGGTTTGTGAGTTTGCAAAGTTAACTCCAGTCCAGCTTCTGGAAGAAACTGAAAAGGCTGTTGGTGATCCACAACTTCCCGAGCAACATCGTGCACTAGTTGATAAAAGTTCTGTATTGAAGAGTATTGAAGTGTCTATGGAGAGACATAAAGGAACCTTGAATCAGTTGAAGCAACAAAATGCTGAACTAGAAAAGGATGTTGAGCGTGTCCGTCTAAGAGATGAGATTCTTGCCAAGGCTGAAACCATGAAAAAGAAAGTGCCTTGGCTTGAATACGACTCGAAGAAGGCTCAATATTTGGAAGCGAAGCAACGTGAGAATAATGCGGCAAAGGCAATGGAGGAAGCTGCAAAGTTACTAAATGATCTCAAGGAACCTATTAAGAAACAGAAGGAGGAAAAGGCTGCATTAGATGGCAAAAGGAAAAAGGTTGAAAGCCGTATAAAAGAGAACTATGACAAGCGATCTGAACATCTTGCTAAAGCAGACCAACTGGATGTGGAGCTGCAAAGGAAGTACAAGGATATGCAAAATTTTAGAGAAGAGGAAGAAACCAGGCAAGAAAAACTTGAAAAAATTAGGAAGGAACTTGCTGCTGCTGAACTTGAACTTGAGAATCTAGGTCCTTCTGATCCTGGTCGACAAGAAGAGATGAAAAGACTAAGAGCTGAAATCTCTGATACTGATTATCAAGCTTATCAAGTGTTGCAGCCTCACATATCTCATGTAGAGAATGAAAAACGTTGTAAAATGGAATCCTTGAATACATGTAAAAAAAGGTTGAACGGCATGGACCATAAAGTTACAAAATATTTGGATGTATTGCGAGATGCAGGGACAGGCAAGATTTTTGAAGCCTATAATTGGGTCCAAGAACATCATAAAATCTTCAATAAGGAGGTTTATGGCCCAGTATTAGTAGAGGTGAATGTCCGAGATCGAGGTCATGCTGCTTACCTAGAGGGTCAAGCTGCGCAATATATTTGGAAGTCGTTCATAACACAAGATCCTGGTGATCGGGACCTCTTGGTGAAGAACCTAAAGTGCTTTGATGTTCCAGTTTTAAATTATGCTGGTGATGTTGACCAACGAAAAGGGATTTCTGAAATTCGAGATGATATGCGTGCCCTTGGCATTCACTCCCGGCTGGACCAAGTCTTTGATGCTCCAATTGCTGTCAAGGAGGTTTTGATTCGCCAGTTTAATTTGGATAATTCTTATATTGGATCCAAAGTTACTGATGAGAAGGCTGACGAGGTTCCAAAATTGGGAATTTATAATTTGTGGACACCGGAAAATCACTATGTGTGGTCTAAGTCTAAATATGGGGGGCATATTTCTGCCATGGTCGAACAAGTGGGAGTCCCAAAGTTTATAGAGAATAGTTCAAATGTCGGAGAAATTGAGAAGCTGAAATTCCAGGAAAAGGATCTTGAAGGAAGTATTGCTACCTTGGATGAAGATGCTAAGAGATCTCGAGATAAGCATAAATTCTTAATTAATAAATCTGCCGAACTTCGTAGAAAGATGGAGGAGATTAATGATTTATTCCAAGAAGAGAAACGAAAACTCCATCGTATTGAGAAAAAGAGAGATGAACTGAAATCATTGGAGGAGCCCATCGATAGAGATGCCGAGATAGCAAAGTTTGTTGATCAAGCAAATAAACTTAACATTCAGAGATTCCATAATGCAATGAAACTAAAGGAACTTCTCATTGAGTGTGTTGCTTATAGAAGAAGCTTTATTGAACAACGGATATCTTCGATTGAATTTGATGCTAAGATTGGAAAATTGGAGGCAGATCTAAAGCAGCATGAGGGGGTTGCCATTCGGGCAACTATGCAATTTCAGAACTTTGAGAAAGAGACTGAGAGTTGTCAACAGCAGCTGGCAGAATCCTTGAATCTTGCTAAATCAATTGCACCATTGACACCTGAGCTAGAGAACGAATTTCACAAGATGCCCACTACAATTGAGGATTTAAATACTGCTATCCGAGAAACAATCTCTGAAGCCAGGTCAATCTTCACACTTAATAATAATGCATTGGAGGAGTATGAGGATCGTCAACAAAAGATAGAAGAGCTTGCAGCAAAACTTGCTGCAGAGGAGGAAGAACATGGAAGATCTAATACTGAAATTGAGGAAATTAAGGATAAATGGCTTCCAGCACTTCGAAACCTTGTGGCTCAGATAAATGAAACTTTTGGCCGTAATTTTCAAGAGATGGCTGTTGCTGGCGAAGTTTCGCTAGATGAGCGTGATAAGGAATATGGCCAATATGGAATTTGTATCAAAGTCAAATTCAGACAAAATGGAAAACTTGAAGTTCTTAGTGCTCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATCGTATATCTTCTTTCCCTTCAGGATCTTACAAATGTCCCGTTTAGAGTTGTTGATGAAATCAACCAGGGCATGGACAAAATAAACGAAAGAAAGATGTTCCAGCAACTAGTCAGAGCTGCAAGCAAGCCGAATACGCCACAGTGCTTCTTGCTTACCCCCAAATTGCTTCCAAACCTTCAATATAGTGAAGCATGCACCATATTGACTGTGATGAATGGCCCTTGGATTCGCGAACCCACAGAGATATGGAAGGAAGGTGAAGCATATGGTATTATTGTCTGCGGTCTCTTGGGGAAAACCCATTGTTGA 3156 0.4059 MEEPPPAKRPKILRGDDDYMPGNILEIELFKFMTFDQFKCKPGPRLNLVVGPNGSGKSSLVCAIALGLCGEPQLLGRATSVGAYVKRGEESGSIKITLRGNSKDEVIAITRKINTNNKSEWLLNGNIVPRTNVAETVKRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALVDKSSVLKSIEVSMERHKGTLNQLKQQNAELEKDVERVRLRDEILAKAETMKKKVPWLEYDSKKAQYLEAKQRENNAAKAMEEAAKLLNDLKEPIKKQKEEKAALDGKRKKVESRIKENYDKRSEHLAKADQLDVELQRKYKDMQNFREEEETRQEKLEKIRKELAAAELELENLGPSDPGRQEEMKRLRAEISDTDYQAYQVLQPHISHVENEKRCKMESLNTCKKRLNGMDHKVTKYLDVLRDAGTGKIFEAYNWVQEHHKIFNKEVYGPVLVEVNVRDRGHAAYLEGQAAQYIWKSFITQDPGDRDLLVKNLKCFDVPVLNYAGDVDQRKGISEIRDDMRALGIHSRLDQVFDAPIAVKEVLIRQFNLDNSYIGSKVTDEKADEVPKLGIYNLWTPENHYVWSKSKYGGHISAMVEQVGVPKFIENSSNVGEIEKLKFQEKDLEGSIATLDEDAKRSRDKHKFLINKSAELRRKMEEINDLFQEEKRKLHRIEKKRDELKSLEEPIDRDAEIAKFVDQANKLNIQRFHNAMKLKELLIECVAYRRSFIEQRISSIEFDAKIGKLEADLKQHEGVAIRATMQFQNFEKETESCQQQLAESLNLAKSIAPLTPELENEFHKMPTTIEDLNTAIRETISEARSIFTLNNNALEEYEDRQQKIEELAAKLAAEEEEHGRSNTEIEEIKDKWLPALRNLVAQINETFGRNFQEMAVAGEVSLDERDKEYGQYGICIKVKFRQNGKLEVLSAHHQSGGERSVSTIVYLLSLQDLTNVPFRVVDEINQGMDKINERKMFQQLVRAASKPNTPQCFLLTPKLLPNLQYSEACTILTVMNGPWIREPTEIWKEGEAYGIIVCGLLGKTHC 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90868g00006 1051 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 5 1030 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Stsc90868g00006 1051 Gene3D - 845 1008 IPR027417 -
Stsc90868g00006 1051 Coils Coil 835 876 - -
Stsc90868g00006 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 994 IPR027417 -
Stsc90868g00006 1051 Gene3D - 23 226 IPR027417 -
Stsc90868g00006 1051 Coils Coil 317 358 - -
Stsc90868g00006 1051 Coils Coil 251 302 - -
Stsc90868g00006 1051 Pfam RecF/RecN/SMC N terminal domain 26 991 IPR003395 -
Stsc90868g00006 1051 Coils Coil 651 692 - -
Stsc90868g00006 1051 FunFam Structural maintenance of chromosomes 5 846 1017 - -
Stsc90868g00006 1051 Coils Coil 194 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90868g00006 Stsc-Chr90868 35968 55544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90868g00006 7 1039 Structural Maintenance of Chromosomes family AT5G15920 55.385 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90868g00006 K22803 - gmx:100778678 1359.74