Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90867g00007 ATGACTGCTCTTAGGGGAAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATAAAATCCTGGTGATGGAGGGAGGGAAAGTTACTCAGTCAGGTAGTTATGATGATCTCCTAACAGCTGGGACGGCATTTGAGCAACTTGTGACTGCTCACAAAGATGCAATAAATGAGTTTGATCAGAACAATCATAACCAAGGAGGACCAGAAAATGATAAGGCTATGACTCCTCCAGAAGTGTCTCAAGGTTCTAATCTCTCTAAAACTCAAAGTGAGGGTGAGATTTCTTTCAAGGGTCAAATTGGCTCACAGCTCACACAAGAGGAAGAGAAAGAGTTTGGTGAACTTGGGTGGAAGCCATTTTGGGATTACATTTATTTCTCCAAGGGGAAGCTTATGCTGTGTTTCATGATATTAGGACAATTTGCTTTTGTTGCTTTGCAATCTGCATCAACCTTTTGGCTTGCACTAGCCATTGAGATCCCAAAAGTGACTAATTCTGCTTTGGTTGGAGTTTACTCATTGGTCTCATTGAGCAGTGCTTTTTTTGTGTATCTGAGATCTTTGGTATCTGCACTTCTGGGATTAAAAGCTTCATCAGCCTTCTTCTCTAGTTTCAATAATGCTATCTTCAATGCTCCTATGCTGTTCTTTGATTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTGAGTATTCTAGACTTTGATATACCTTATTCAATCACTTTTGTAGCATCTGTAGCTATTGAAATTGTGGTGATAATTGGTATAATGGCTTCAGTCACATGGCAAGTTCTAATAGTTGCAATTCCTGCTATGGTAGCATCAAAATATGTTCAGGGATATTATCAAGCCTCTGCAAGAGAAATAATAAGGATCAATGGAACAACCAAAGCACCTGTGATGAATTTTGCAGCCGAGACATCACTCGGAGTGGTTACTGTCAGAGCATTCAACATGGTGGACAGATTTGTCAAGAACTACCTAAAGCTTGTGGACACAGATGCATCACTTTTCTTTCATTCTAATGTGACCATGGAATGGTTACTTCTAAGGATTGAAACACTTCAAAACTTGACAGTCTTCACTGCAGCCTTGTTACTTATTCTTGTTCCTATGGATTATGTGTCCCCAGGGCTTGTGGGACTGTCACTTTCTTATGCCTTCACATTGACATCAGCACAAATATTTTGGACCAGATGGTTTTGCAACTTATCAAACTACGTTATCTCTATTGAAAGAATCAAACAGTTCATTCACATACCAGCTGAGCCTCCTGCCATTATTGAAGATAACAGGCCTCCACCTTCATGGCCATGGAAGGGTAGAATTGATCTTCAATCCTTAGAGATTAGATATCGTCCGAATGCACCAATAGTTCTGAAGGGAATCACTTGCACATTCAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGGACAGGAAGTGGAAAAACAACACTTATAAGTGCATTGTTTCGATTGGTTGAGCCTTCAAGAGGTAACATTATTATTGATGGGATTGACATATGCTCATTGGGGTTGAAGGATTTGAGAATGAAGCTAAGCATTATCCCTCAAGAAGCAACTCTTTTCAAGGGAAGCATTAGAACAAACTTGGACCCCTTAGGCCTTTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAGACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGAGGCAACTGTTTTGTCTTGGAAGAGTGCTTCTTAAGAGGAACAGGATTCTTGTTCTTGATGAAGCAACTGCATCCATTGATTCCGCTACAGATGCCATTCTACAAAGAATTATTAGAGAAGAATTTGCAGAATGCACTGTAATAACTGTGGCTCACAGAGTTCCAACTGTTATAGACAGTGACATGGTCATGGTCCTATCTTATGGGAAACTACTGGAATATGATGATCCTTCAAAGCTTATGGAGACGAACTCTTCATTCTCTAAGCTTGTAGCTGAATATTGGGCAAGTTGCAGGAGGAGTTCTTCCTCAAATCTAAGGAGGCAACAATCATGA 2115 0.4047 MTALRGKTVILVTHQVEFLSEVDKILVMEGGKVTQSGSYDDLLTAGTAFEQLVTAHKDAINEFDQNNHNQGGPENDKAMTPPEVSQGSNLSKTQSEGEISFKGQIGSQLTQEEEKEFGELGWKPFWDYIYFSKGKLMLCFMILGQFAFVALQSASTFWLALAIEIPKVTNSALVGVYSLVSLSSAFFVYLRSLVSALLGLKASSAFFSSFNNAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVAIEIVVIIGIMASVTWQVLIVAIPAMVASKYVQGYYQASAREIIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFVKNYLKLVDTDASLFFHSNVTMEWLLLRIETLQNLTVFTAALLLILVPMDYVSPGLVGLSLSYAFTLTSAQIFWTRWFCNLSNYVISIERIKQFIHIPAEPPAIIEDNRPPPSWPWKGRIDLQSLEIRYRPNAPIVLKGITCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPSRGNIIIDGIDICSLGLKDLRMKLSIIPQEATLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFAECTVITVAHRVPTVIDSDMVMVLSYGKLLEYDDPSKLMETNSSFSKLVAEYWASCRRSSSSNLRRQQS 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90867g00007 704 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 692 - -
Stsc90867g00007 704 CDD ABC_6TM_ABCC_D2 136 427 IPR044726 GO:0140359
Stsc90867g00007 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 54 IPR027417 -
Stsc90867g00007 704 SMART AAA_5 478 671 IPR003593 GO:0016887
Stsc90867g00007 704 CDD ABCC_MRP_domain2 450 670 - -
Stsc90867g00007 704 Gene3D - 435 686 IPR027417 -
Stsc90867g00007 704 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 454 686 IPR003439 GO:0005524
Stsc90867g00007 704 Pfam ABC transporter transmembrane region 172 400 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90867g00007 704 Gene3D ABC transporter type 1, transmembrane domain 102 433 IPR036640 GO:0005524|GO:0016020
Stsc90867g00007 704 FunFam ABC transporter C family member 5 102 433 - -
Stsc90867g00007 704 FunFam ABC transporter C family member 3 435 686 - -
Stsc90867g00007 704 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 140 402 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90867g00007 704 Gene3D - 1 78 IPR027417 -
Stsc90867g00007 704 Pfam ABC transporter 469 617 IPR003439 GO:0005524
Stsc90867g00007 704 SUPERFAMILY ABC transporter transmembrane region 123 432 IPR036640 GO:0005524|GO:0016020
Stsc90867g00007 704 MobiDBLite consensus disorder prediction 63 91 - -
Stsc90867g00007 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 685 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90867g00007 Stsc-Chr90867 62755 66312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90867g00007 450 701 Calmodulin-binding Proteins AT2G36910 31.395 7.71e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90867g00007 - - vvo:131595584 1069.3