Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90862g00006 ATGAAGTTTCTAGGATCATGTCTGAAGAGCATGGATACCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATCTGTACAAGTATTACAAGAAGACAAAGGAAGGAAAAGCNNNNNNNNNNGCTCGAAGCCTTATACGGTGAAAACAACAGCAATGCTGCCTCCGCCGCACAAGAAACCAATTTCGGTGGCAGCACCACCCTCCATTACCACACCAACACCCATGCTTTCAATTCCCACATCAACCAAGAAATGCTGCTTCTTGGTTCCCAGAACAGCCTAAGCCTCACCAACTCCACTGAGTTTGAGACCACTTCTTCTGATGATGATGATCACAACAGCACTGGGGGAGTCAAGGAGAAGAACGATGAGTCCACGGAGAAGATCAGGAGGAAGAGAGGAGGGGCCAAGAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTTGCAAATGAGGAAGCTTGTGCAGAAGCAAGAAGAGTGGCTTGACAAGCTCATGAAGACGCTGGAGCAGAAGGAGAAAGAGAGGGTTCTGAGAGAAGAAGAGTGGAGGAGACAAGAGGCGGCGAGGTTGGAGAGGGAGCACAAGTTTTGGGCCAAAGAGAGAGCATGGATTGAGGCAAGAGATGCTGCTTTAATGGAGGCCTTACACAAGCTGACAGGAACTGCTACTGATCAGGTAAAGTCTCATCATCATGATGGGATAATAATGCAAAATGAGGAGCATAACAATGAAGATGGTGAGAACTGGCAAGAATGTGAGATATCAAGGCTTGTTCAGTTGAGAGCTGAGATAGTGGAAACGAGGTTTAGGCAAGGCGGTGGTAGTTGTTCAGAAGAGGGTTTGTGGGAAGAGATAGCAACAAAAATGGCATGTTTTGGGTATGAAAGGAGTTCAACAAAGTTGAAAGAGAAATGGGAAACAATCAGCAAAGGAAACAACAAGAAGAAGCGGAAGGAGAATAACCCAAACTCAGTAAGAAGTAGCACTTCTTGTTTTTACATTGAAAACAATAACAGCAACAATGACCATTATTCTTCGTCTTCTTCCCTATATAACAACAACCACCACCATGGGTACTGTGATATCAACAATGATCAAAGGCGGCAACAACAACAACAACAACAATCACCTTCGAATTCCAACGCCAATGCATCAGTTCATCAAGCTGAGAACTGTTTCCCATTCTTGATGGGTTGCGAGGGAGGAACTTTGTGGGACAACTACAGCTTAAAGGTTAATAAACCAAACCAAAATCAGTAG 1266 0.4423 MKFLGSCLKSMDTKGVGKSAGRSLRICTSITRRQRKEKXXXXLEALYGENNSNAASAAQETNFGGSTTLHYHTNTHAFNSHINQEMLLLGSQNSLSLTNSTEFETTSSDDDDHNSTGGVKEKNDESTEKIRRKRGGAKSWKVKIKDFIDLQMRKLVQKQEEWLDKLMKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALHKLTGTATDQVKSHHHDGIIMQNEEHNNEDGENWQECEISRLVQLRAEIVETRFRQGGGSCSEEGLWEEIATKMACFGYERSSTKLKEKWETISKGNNKKKRKENNPNSVRSSTSCFYIENNNSNNDHYSSSSSLYNNNHHHGYCDINNDQRRQQQQQQQSPSNSNANASVHQAENCFPFLMGCEGGTLWDNYSLKVNKPNQNQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90862g00006 421 CDD GT1 249 310 - -
Stsc90862g00006 421 PANTHER FI21293P1 38 384 - -
Stsc90862g00006 421 Coils Coil 156 183 - -
Stsc90862g00006 421 Gene3D - 251 316 - -
Stsc90862g00006 421 MobiDBLite consensus disorder prediction 106 133 - -
Stsc90862g00006 421 MobiDBLite consensus disorder prediction 99 134 - -
Stsc90862g00006 421 MobiDBLite consensus disorder prediction 345 387 - -
Stsc90862g00006 421 FunFam Trihelix transcription factor GT-2 251 317 - -
Stsc90862g00006 421 MobiDBLite consensus disorder prediction 310 324 - -
Stsc90862g00006 421 ProSiteProfiles Myb-like domain profile. 243 311 IPR001005 -
Stsc90862g00006 421 MobiDBLite consensus disorder prediction 310 331 - -
Stsc90862g00006 421 Pfam Myb/SANT-like DNA-binding domain 249 330 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90862g00006 Stsc-Chr90862 63439 66399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90862g00006 43 416 Trihelix Transcription Factor Family AT5G03680 36.408 7.07e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc90862g00006 Myb_DNA-bind_4 7.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90862g00006 - - aip:110263365 565.844