Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90861g00003 ATGGCACCTAATGAAAACTCAGCAACAGAATTAACAGCACTTGTTGTGGATGATGATAGACAATTAAGGATGATTCATCAGAGGATGCTGAACAAAGTTGGAGTGAAGAATCAGGCAGTGGAGAATGGCAAAGAAGCTGTACAAATTCATTGCTCCGGTCAAGGATTTGACCTCATTCTCATGGACAAGGAAATGCCTTTGATGAATGGCATCGAGGCAACAAAGGAGCTTAGGTCAATGGGAATTTGTAGCACAATTGTTGGGGTGTCATCTCACACAAAGGAAAAGCAAATACAAGAATTTATGGAAGCAGGGCTTGATGACTATCTAGTCAAACCTTTAAACCTTGCTAAGCTGCGTTCAATTCTTGATAAGATCATGTGA 384 0.4062 MAPNENSATELTALVVDDDRQLRMIHQRMLNKVGVKNQAVENGKEAVQIHCSGQGFDLILMDKEMPLMNGIEATKELRSMGICSTIVGVSSHTKEKQIQEFMEAGLDDYLVKPLNLAKLRSILDKIM 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90861g00003 127 Pfam Response regulator receiver domain 14 123 IPR001789 GO:0000160
Stsc90861g00003 127 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Stsc90861g00003 127 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 127 - -
Stsc90861g00003 127 CDD REC_hyHK_CKI1_RcsC-like 14 123 - -
Stsc90861g00003 127 SUPERFAMILY CheY-like 10 126 IPR011006 -
Stsc90861g00003 127 SMART REC_2 11 123 IPR001789 GO:0000160
Stsc90861g00003 127 Gene3D - 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90861g00003 Stsc-Chr90861 20480 20956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90861g00003 11 127 Response Regulator Gene Family AT3G04280 43.697 5.30e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc90861g00003 Response_reg 6.6e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90861g00003 - - vvo:131612427 168.703