Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90860g00009 ATGGAAGCACAAGAGTTATTCCAGAACAACTTGTGCCAACAATTTCCCTCCGACAATTCCAACAACGCCCCTAATTCTGACCATTTCATTGTTGAGGAATTCTTCGACTTCTCCAATAACGATGATGCTGATGCTGATGATGCCCCTTTTATCTCCGACACCACCACCTTTGACTCCCTCACCGGCAACTCCATTGATTCCTCCTCCACCGCTGCCGTTCTTGACAGTGCCAATTCCTCTGCCTCCCACCCAAATATCCTCAACACTAATGATACCCCTTTCTCCAACGACCTTCCTGTCCCTGTCCCGTATGATGATCTCGTGGAGTTGGAATGGTTGTCCAATTTTACGGAAGAATCATTCTCAAGCGAGGAGGACATACAGAAGATGCAGCTCATATCAGGTATAAAAGCCCAAAATGATGTCATCTCTGAGGCTCATGAATTCATCCGGTCTGAGCAGCCCAACCGAATAATTAACCCAGTACTCAACCCAGAGGTTTCAGTCCCAGCCAAGGCCCGAAGCAAGCGAACACGAGGGCCTCCATGCAATTGGACCTCTCGCCTGCTGGCAGTCTCTTCAATCTCATCGGCCCAGTCCGAGCCTGTGATAGCAACCCCAAAGAAGCATACAGCTCGTAAGAAGGAGAACAGAGATGGAGGAGAGGGGAGGAAGTGCCTACATTGTGCAACTGAGAAGACGCCACAGTGGCGGACAGGGCCCATGGGACCTAAGACGTTGTGCAATGCATGTGGAGTAAGGTATAAGTCAGGGCGATTGGTGCCGGAATACAGGCCTGCTGCGAGCCCAACGTTTGTTCTGACAAAGCACTCTAACTCGCACCGGAAAGTGATGGAGCTGAGACGCCAAAAGGAGATGATGATGCAAACGCAGCAACAGGAGCAGCAGCAGCAATTGCTGCATCATCATCGCCAGAGGATGATGTTTGATGTTTCACACAACAGTGATGATTACTTCATCCATCAACACATGGGCCCTGATTTCGGACACCTGATGTAG 1020 0.5 MEAQELFQNNLCQQFPSDNSNNAPNSDHFIVEEFFDFSNNDDADADDAPFISDTTTFDSLTGNSIDSSSTAAVLDSANSSASHPNILNTNDTPFSNDLPVPVPYDDLVELEWLSNFTEESFSSEEDIQKMQLISGIKAQNDVISEAHEFIRSEQPNRIINPVLNPEVSVPAKARSKRTRGPPCNWTSRLLAVSSISSAQSEPVIATPKKHTARKKENRDGGEGRKCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMMQTQQQEQQQQLLHHHRQRMMFDVSHNSDDYFIHQHMGPDFGHLM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90860g00009 339 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
Stsc90860g00009 339 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355|GO:0043565
Stsc90860g00009 339 PIRSF Txn_fac_GATA_plant 1 316 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc90860g00009 339 FunFam GATA transcription factor 214 304 - -
Stsc90860g00009 339 CDD ZnF_GATA 225 272 IPR000679 GO:0006355|GO:0043565
Stsc90860g00009 339 Pfam GATA zinc finger 226 259 IPR000679 GO:0006355|GO:0043565
Stsc90860g00009 339 Coils Coil 284 304 - -
Stsc90860g00009 339 MobiDBLite consensus disorder prediction 201 223 - -
Stsc90860g00009 339 PANTHER GATA TRANSCRIPTION FACTOR 19 302 - -
Stsc90860g00009 339 Gene3D - 221 312 IPR013088 GO:0006355|GO:0008270
Stsc90860g00009 339 SMART GATA_3 220 270 IPR000679 GO:0006355|GO:0043565
Stsc90860g00009 339 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90860g00009 339 MobiDBLite consensus disorder prediction 207 223 - -
Stsc90860g00009 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90860g00009 Stsc-Chr90860 43703 44966 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90860g00009 23 339 C2C2-Gata Transcription Factor Family AT4G32890 45.783 1.58e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc90860g00009 GATA 7.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90860g00009 - - pvy:116140711 344.739