LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90860g00003	ATGGAAGCGCAGGAGTTGTTTCAGCAGCAGGAGCAGGATAATTTCTTTGACAATAATGCCCCTAATTCCGATCATTTCATGGTTGAGGAATTCTTTGACTTCTCCAACGAAGAAGCTGCTACAGCCCCGTTTATCCCTAACACCACTGCCAACAACTTTGACTCTCCTTCCGCCAACTCTACCGAATCCTCACCTGCTGCCCACGACAGCTTCAATTCCTCCTCCTCCCACCCCAATTTCCTCACCACCGAAGCTCATCTCTCCGCCGACCTCTCCGTCCCGTATGATGATCTTGCTGAGTTGGAATGGTTGTCCAATTTCACTGAGGAGTCATTCTCTAGTGAAGACCTGCAGAGGATGCAGCTCATATCAGGCATAAAATCCCGAAATGATTCCGTCTCTGAGGCCCGTGAATTCGAGCCCAACCGAGCTAACTCAATACTCAACCCACAACTGTCGGTTCCAGCTAAGGCCCGAAGCAAGCGCTCGCGTGGGCCTCCATGCAACTGGAATTCACGCCTCCTGGTGGTGTCCCCTACCACATCTTCTTCCCAGTCCGAGCCCATAGCAGTCCCCAAGAAGCCCGTGGCGAGGAAGAAGGACAACAGAGATGAAGGTGGAGAGGGCAGAAAGTGCCTACACTGCGCAACGGACAAGACACCTCAGTGGCGAACTGGGCCCATGGGCCCGAAGACATTGTGCAATGCATGCGGAGTGAGGTATAAGTCGGGGCGGCTGGTGCCGGAATATAGGCCGGCTGCCAGCCCGACTTTCGTACTGACAAAGCACTCGAACTCCCACCGGAAGGTGCTGGAGTTGCGANNNNNNNNNNAGATGATGCGGGCCCAGCAAGAGCATCAGCAGCAACTGCTTCATCATCACCATCACCAGATGATGTTTGATGTCTCATCCAACGGTGAGGATTACTTGATTCATCAGCAAGTGGGTCCCAGTTTCGGGCACCTAATCTAG	972	0.5278	MEAQELFQQQEQDNFFDNNAPNSDHFMVEEFFDFSNEEAATAPFIPNTTANNFDSPSANSTESSPAAHDSFNSSSSHPNFLTTEAHLSADLSVPYDDLAELEWLSNFTEESFSSEDLQRMQLISGIKSRNDSVSEAREFEPNRANSILNPQLSVPAKARSKRSRGPPCNWNSRLLVVSPTTSSSQSEPIAVPKKPVARKKDNRDEGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRXXXXMMRAQQEHQQQLLHHHHHQMMFDVSSNGEDYLIHQQVGPSFGHLI	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90860g00003	323	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	207	270	-	-
	Stsc90860g00003	323	Gene3D	-	206	256	IPR013088	GO:0006355\|GO:0008270
	Stsc90860g00003	323	MobiDBLite	consensus disorder prediction	1	22	-	-
	Stsc90860g00003	323	MobiDBLite	consensus disorder prediction	193	211	-	-
	Stsc90860g00003	323	PIRSF	Txn_fac_GATA_plant	1	304	IPR016679	GO:0003677\|GO:0005634\|GO:0045893
	Stsc90860g00003	323	MobiDBLite	consensus disorder prediction	173	189	-	-
	Stsc90860g00003	323	MobiDBLite	consensus disorder prediction	41	79	-	-
	Stsc90860g00003	323	Pfam	GATA zinc finger	212	245	IPR000679	GO:0006355\|GO:0043565
	Stsc90860g00003	323	MobiDBLite	consensus disorder prediction	1	21	-	-
	Stsc90860g00003	323	FunFam	GATA transcription factor	201	289	-	-
	Stsc90860g00003	323	SMART	GATA_3	206	256	IPR000679	GO:0006355\|GO:0043565
	Stsc90860g00003	323	ProSitePatterns	GATA-type zinc finger domain.	212	237	IPR000679	GO:0006355\|GO:0043565
	Stsc90860g00003	323	PANTHER	GATA TRANSCRIPTION FACTOR	18	289	-	-
	Stsc90860g00003	323	MobiDBLite	consensus disorder prediction	39	79	-	-
	Stsc90860g00003	323	CDD	ZnF_GATA	211	258	IPR000679	GO:0006355\|GO:0043565
	Stsc90860g00003	323	ProSiteProfiles	GATA-type zinc finger domain profile.	206	242	IPR000679	GO:0006355\|GO:0043565
	Stsc90860g00003	323	MobiDBLite	consensus disorder prediction	134	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90860g00003	Stsc-Chr90860	7949	9443	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90860g00003	87	323	C2C2-Gata Transcription Factor Family	AT5G25830	56.767	4.79e-86	260

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Stsc90860g00003		GATA	2.9e-15	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90860g00003	-		-	qsa:O6P43_019485	357.836