Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90858g00011 ATGGGTGCATTGTCACACAAATGGTTGAGAATTATCAGAAGGAAGTTCTCAATAATAAGATCATCAAACAAAGACATTACTCTACCTTATACAAGAAGAAACCAAATTGAAGAAGAAGAAGAAGAAACCACCACCATTGAAGATTATCTCAGTTCATCAGCCATTGATGATAATAAGGAAGATCTTGCAGCAATCAAGATCCAAGCTTATTTTAGGGGGCATCTTGCAAGAAGAGCATATAGAGGTCTAAGAAGCATTGTGAAGGTGCAAGCATTGGTTCGTGGTGTTTTTGTGAGGAAACAATCACATATTGCTATGCAATCCCTAAGTCAACATTTTTCTCCAACCTCTGCCGCCGTGACTGCGTCTTCCTTCACCGGCACAGCCACCGCCACCGCCGCCTGA 405 0.4198 MGALSHKWLRIIRRKFSIIRSSNKDITLPYTRRNQIEEEEEETTTIEDYLSSSAIDDNKEDLAAIKIQAYFRGHLARRAYRGLRSIVKVQALVRGVFVRKQSHIAMQSLSQHFSPTSAAVTASSFTGTATATAA 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90858g00011 134 Gene3D - 57 112 - -
Stsc90858g00011 134 PANTHER IQ-DOMAIN 5-RELATED 35 110 - -
Stsc90858g00011 134 SMART iq_5 83 103 IPR000048 GO:0005515
Stsc90858g00011 134 SMART iq_5 59 81 IPR000048 GO:0005515
Stsc90858g00011 134 Pfam IQ calmodulin-binding motif 84 101 IPR000048 GO:0005515
Stsc90858g00011 134 Pfam IQ calmodulin-binding motif 63 81 IPR000048 GO:0005515
Stsc90858g00011 134 ProSiteProfiles IQ motif profile. 84 111 IPR000048 GO:0005515
Stsc90858g00011 134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 102 IPR027417 -
Stsc90858g00011 134 ProSiteProfiles IQ motif profile. 60 88 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90858g00011 Stsc-Chr90858 63940 65989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90858g00011 22 109 IQD Protein Family AT3G51380 43.182 7.91e-21 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90858g00011 - - ccaj:109793784 95.5153