Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90856g00001 ATGGGGAGGGGTAAGATTGAGATAAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACTTATTCAAAGAGGAAGAATGGGATCTTAAAGAAGGCTAAGGAAATCAGTGTTCTTTGTGATGCTCAAGTTTCTCTTATCATCTTTGGTGCTTCTGGCAAGATGCATGAATACATCAGCCCCTCCACCACGTTGATTGACATCCTAGACAAATACCAAAAAGCTTCTGGGAAGACTCTATGGGATGCTAAACATGAGAACCTGAGCAATGAAATTGATAGAATCAAGAAAGAGAATGACAGCATGCAAATTCAGCTAAGGCACTTGAAGGGAGAAGACATTACCTCACTGAATTACAAAGAGCTTATGGGCCTAGAAAATGCCCTTGATAAGGGCCTCAATGGAATCCGTGAAAAAAAGGGCAAGATTTTGGAGGAGGAAAACAAGGAACTCAATTTCCTTCTGCAACAGCATATGGCACTGGAAGGAGCAAGAAACATGCATGGACAATGGATTTAA 516 0.4147 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDILDKYQKASGKTLWDAKHENLSNEIDRIKKENDSMQIQLRHLKGEDITSLNYKELMGLENALDKGLNGIREKKGKILEEENKELNFLLQQHMALEGARNMHGQWI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90856g00001 171 Pfam K-box region 81 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc90856g00001 171 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc90856g00001 171 ProSiteProfiles K-box domain profile. 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc90856g00001 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc90856g00001 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc90856g00001 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc90856g00001 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc90856g00001 171 Coils Coil 143 163 - -
Stsc90856g00001 171 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Stsc90856g00001 171 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Stsc90856g00001 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc90856g00001 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc90856g00001 171 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Stsc90856g00001 171 Coils Coil 77 111 - -
Stsc90856g00001 171 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90856g00001 Stsc-Chr90856 8949 11818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90856g00001 1 137 MADS-box Gene Family AT5G20240 70.073 3.17e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc90856g00001 K-box 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90856g00001 K09264 - gmx:100795861 290.041