Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90854g00007 ATGGGTAGTAGAGCTAGAACAGTTAACGTTAGCAGCACTGGGGACAGTAACAACGTTGTCAACGGGATGCCAAGTTACGCTCCTCCACCTCCTATGCCTTCTTCTTCTAGTTCCATGGGCATTGATGCAACTAATGTTCTTCCTTCTCGAATTTCTGAATTTGGAAACCTTGAACAGACTCTTGGATTTCGCGTTGAGGATGCCATCAATCTTAGCAGAAATCCATTGTTTAATCAACTTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTAAGTAAGGCGTTGCCATTACAAAAAGATTCGCAACCAAATCTAGCTTCGACATCTGCTGGTCATCGTGAGAACTGGGGAGAGTCCAACATGGCGGATGGAAGCCCTAGGACAGATACTTCAACAGATGATACAGAAGATAAAAATCAAATGCCTGAAAGGGGTGAATCAAGTGAAAGATCAAAAGATAAAGCAGATCAAAAGACATTACGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGGTTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTTACTCAACTTGAGCAGGAGCTGCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCTCAGGAGATCAGGCCCATTCAATGAGTGGAAATGGTGCTATGGCCTTTGACGTAGAGTATGCACGATGGTTGGAAGAGCATAATAGGCAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTCCGTACCATTGTCGATAATTTCATGACGCAATTTGATGATATCTTCAGGCTCAAGGGTATTGCTGCAAAAGCAGATGTTTTCCACATCCTTTCAGGAATGTGGAAGACTCCGGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGATCTTCTGAGCTTCTTAAACTTCTTGTAAATCAACTGGAGCCTTTAACGGAGCAACAATTGATGGGCATCTACAACTTGCAGCAGTCATCGCAGCAGGCCGAAGATGCGTTGTCTCAGGGAATGGATGCATTGCAGCAATCACTTGCTGAGACATTGGCAAATGGTGCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTTGAAGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACGTTACAACAGATGCTTCGAATTTTGACAACTAGGCAATCAGCTAGAGCTCTCCTTGCAATTAGTGATTATTTCTCGCGGCTGCGAGCTCTAAGTTCTTTGTGGCTCGCCCGACCGAGGGAATGA 1353 0.4523 MGSRARTVNVSSTGDSNNVVNGMPSYAPPPPMPSSSSSMGIDATNVLPSRISEFGNLEQTLGFRVEDAINLSRNPLFNQLQMKSNSQALGADVQFGALSKALPLQKDSQPNLASTSAGHRENWGESNMADGSPRTDTSTDDTEDKNQMPERGESSERSKDKADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGAPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90854g00007 450 MobiDBLite consensus disorder prediction 136 166 - -
Stsc90854g00007 450 MobiDBLite consensus disorder prediction 106 135 - -
Stsc90854g00007 450 FunFam BZIP family transcription factor 164 213 - -
Stsc90854g00007 450 Gene3D - 164 216 - -
Stsc90854g00007 450 PANTHER TRANSCRIPTION FACTOR TGA9 119 450 - -
Stsc90854g00007 450 SUPERFAMILY Leucine zipper domain 165 208 IPR046347 GO:0003700|GO:0006355
Stsc90854g00007 450 SMART brlzneu 161 224 IPR004827 GO:0003700|GO:0006355
Stsc90854g00007 450 ProSiteProfiles DOG1 domain profile. 230 447 IPR025422 GO:0006351|GO:0043565
Stsc90854g00007 450 CDD bZIP_HBP1b-like 165 217 - -
Stsc90854g00007 450 MobiDBLite consensus disorder prediction 106 166 - -
Stsc90854g00007 450 MobiDBLite consensus disorder prediction 1 38 - -
Stsc90854g00007 450 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 168 183 IPR004827 GO:0003700|GO:0006355
Stsc90854g00007 450 Coils Coil 184 211 - -
Stsc90854g00007 450 Pfam Seed dormancy control 248 322 IPR025422 GO:0006351|GO:0043565
Stsc90854g00007 450 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 207 IPR004827 GO:0003700|GO:0006355
Stsc90854g00007 450 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90854g00007 450 Pfam bZIP transcription factor 164 205 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90854g00007 Stsc-Chr90854 52032 57724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90854g00007 128 450 bZIP Transcription Factor Family AT3G12250 76.133 4.91e-177 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc90854g00007 DOG1 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90854g00007 K14431 - gmx:778136 735.717