Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90852g00003 ATGGTGAAATCAAGTTCGTGCTTCAAGCTCATCACTTGCGGTGGTGGTGCTGATTCTGCAGACACAGACGCTTCTAATTACCAACCACTCTCTGAGGTCAAGGATGCTAATGATAAACGTGGTTGGAGTTTCCGGAAGCGATCTGCAAGGCACCGTGTGCTTAGCAACACTGTAGTTACAGAAACCCCATCTTCAGCAAACAAGGAGAGTTCGGAATGTACAAGTAAAAACTTTCAACCGGTGCCAGCTGAACCTAATGTTGTTGAGAAAATTCATACAACAAGTGTCTCTGATGAGAAGGGTCAGTTACCTTCCTTGGAAAGTTCACAAATACCAGAAAAAATTGTCACAGAAACCAAGAATATGGTGGATGATGATCCAAATCCACCCGAATCAGATGTTATCATAATCCAGGCTGCCATTCGAGGGTGCTTGGCTCGGGGAGCATTGCTAAAGAGCAAGAATGTAGTGAAGTTGCAAGCTGCTTTTCGAGGCCACTTGGTCAGGAGGCATGCTGTAGGAACACTTCGATGTGTTCAAGCCATTGTTAAAATGCAACTCCTTGTCCGAGCTCGTCGTGCTCAGCAGGGTAATGTAAATCACGTGACACACACTTCTATGGAGAAGATAACGAGCAACAAGTTTGCCCGTCAGCTGTTGGAATCAACACCAAAAAATAAACCTATCGGTGTCAAATGTGACCCTTCAAAAAGTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTCTGTTTCAGCAGCAGATTCTGCATATAACGTAAAACCGGTTGGCATGTCTGAACAATCAGACAAAACCAAAGAGAACACTTCTGTTTCTCAATTGGAAATGGACATTCAAACTGAAGTCGATCTTCAGTCACCTGACTCCAGGGAATTGCCTCCAGCATCTGAGGATGAAGATAAGAGAACTACTTATGATGCTAATAACTATAACTATGAAGCAAACCATTCTACATCTTTCATAACAGATGTCCTGGAAGAGATTCCCGAAAAGACTTCTATCAATGATGATAAAGGAACAGCAACTGAAATTGGTTCTTTTCAAAATGGAAAAATGGAAACAGATGAAAGTGCTCCAGAGGAATGTGGTCCTATTGATCAGAAGCCTGAAATTGATACAGCAGACAAACAATCTATGAATCAAGTTGACCTAGACCTACTCGAGACAGAGGGAAAGAAACTTGTGCAGGGAACAAGGAAGTCCAATAATCCTGCTTTTATTGCCGTGCAGTCAAGATTTGAAGAGCTGACTTCAATGGCCAATTCAAGTAAATCAAGCAGTTTGTCCAATCAAGATGCACCGCTTGAATCACAAGCAGACACATCTTCTACTGCTGCAGTTACTGCACATAGATCGAAGGAGTTCTTCTCATCTGAGAATTCAGCAAATTATCCTTTCATAACTGTTGGATCGTCTGAATGTGAAAGGATAGATAATCCTGAAAGTAAGATTGATTGTGGTCTTGATCCCAATGCAGTGCAGACTACTCAAACTAATAACGTATCAAACTCAGATTTGGGTCAATTAGTGATCACTGATGACACGAGCAACAATGTGGTTCATCCAGGGCTTGTTGGGAACTCTCAAGAGGTTGGTATTAAGCCTGAGCAAAATGCATCTGACCTATTGAGAGAACCGGAAGAGGCTATTCAGCAAGATTCCAAGTTGTCTCCGGAAGCTTCTCCAATAAGTCAGCAATATCAACTCAGAACACCATCTAGTCAGGTATCGATGTCCATTCCCGATTCTCAAGGAACCCCATCAAGTCAGGTATCCATCAAACCTAAAGAGAAGAAAACCAATAAGAGTGGATCTGGCAATAAGCGTAAAATCCTGTCTTCCGGTAACAAATCTCCTGCAAGTGCAAATCATGACTCGGACACAAGAGGTAGTAGGGAACAACAACCTAAAGATCAACCGAGTGGAAAGAGACGCAGTTCCTTTGGCTCAGCAAAATCTGATCAAATTGAACAAGAAGCAAGAGATAACAGTAGTAACAATAGTTCTATTCCCCATTTCATGCAAGCTACTGAATCTGCTAGGGCCAAGATGAATGCAAATAACTCTCCAAGATCAAGTCCGGATGTACATGACCAAGACGTCCATCTTAAGAAGAGACATTCCTTACCCGGTGCAACCGGCAGGCAGGACTCTCCACGCATCAACCGATCACCGCAGTCAAGCACGAAGGGAAATGGTGTGCATCTTCAACATGAGAGAAAATGGCAGAGGTGA 2256 0.4295 MVKSSSCFKLITCGGGADSADTDASNYQPLSEVKDANDKRGWSFRKRSARHRVLSNTVVTETPSSANKESSECTSKNFQPVPAEPNVVEKIHTTSVSDEKGQLPSLESSQIPEKIVTETKNMVDDDPNPPESDVIIIQAAIRGCLARGALLKSKNVVKLQAAFRGHLVRRHAVGTLRCVQAIVKMQLLVRARRAQQGNVNHVTHTSMEKITSNKFARQLLESTPKNKPIGVKCDPSKSDSAWKWLERWMSVSAADSAYNVKPVGMSEQSDKTKENTSVSQLEMDIQTEVDLQSPDSRELPPASEDEDKRTTYDANNYNYEANHSTSFITDVLEEIPEKTSINDDKGTATEIGSFQNGKMETDESAPEECGPIDQKPEIDTADKQSMNQVDLDLLETEGKKLVQGTRKSNNPAFIAVQSRFEELTSMANSSKSSSLSNQDAPLESQADTSSTAAVTAHRSKEFFSSENSANYPFITVGSSECERIDNPESKIDCGLDPNAVQTTQTNNVSNSDLGQLVITDDTSNNVVHPGLVGNSQEVGIKPEQNASDLLREPEEAIQQDSKLSPEASPISQQYQLRTPSSQVSMSIPDSQGTPSSQVSIKPKEKKTNKSGSGNKRKILSSGNKSPASANHDSDTRGSREQQPKDQPSGKRRSSFGSAKSDQIEQEARDNSSNNSSIPHFMQATESARAKMNANNSPRSSPDVHDQDVHLKKRHSLPGATGRQDSPRINRSPQSSTKGNGVHLQHERKWQR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90852g00003 751 Gene3D - 131 178 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 648 701 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 430 453 - -
Stsc90852g00003 751 PANTHER IQ-DOMAIN 5-RELATED 36 723 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 554 751 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 358 383 - -
Stsc90852g00003 751 ProSiteProfiles IQ motif profile. 131 158 IPR000048 GO:0005515
Stsc90852g00003 751 ProSiteProfiles IQ motif profile. 152 181 IPR000048 GO:0005515
Stsc90852g00003 751 Pfam Protein of unknown function (DUF4005) 661 734 IPR025064 -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 702 718 - -
Stsc90852g00003 751 Pfam IQ calmodulin-binding motif 154 171 IPR000048 GO:0005515
Stsc90852g00003 751 Pfam IQ calmodulin-binding motif 134 147 IPR000048 GO:0005515
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 361 380 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 59 80 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 561 601 - -
Stsc90852g00003 751 SMART iq_5 151 173 IPR000048 GO:0005515
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 286 311 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 722 740 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 613 632 - -
Stsc90852g00003 751 MobiDBLite consensus disorder prediction 633 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90852g00003 Stsc-Chr90852 57717 62564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90852g00003 131 251 IQD Protein Family AT1G19870 59.690 1.98e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90852g00003 - - aip:107645297 1252.27