Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90851g00006 ATGGCGGGGGCGAAATCGGAGGACTGCAACAAGGGGTTTGCAGACAGCTACATGTTGCTGAAGCACGCAGACGCCCGATTCATGGATCTGCTCCACGTGCTGGCTTCGCGAAACATGTCACGGAGGAAGTTCGTGGAGAGCCACGCGGAGGGGGAATTGGAAGAGAGCTTCGGCCACCGCTGGCTTGTATTCATCTCTATCTTGCTCCAGAAGCTCTTGCAGCTTGTGGCCAAGCCATTAGCCTTCTTTGGCTTCTGCGTTGAGCTTCTCATCAACTTGATTGCCCTCAATGGTGGTCTTTTCTCTATCATTTTCAACTTCCTAACAGGGAAGTTGGTGTTGCCTGATCCAAGATCAGCAAACTATTTGTCGTGTATTGGGAATTTGGATGTGAGACTAAAATTGGATGGGATCAATCGTGAAGATAGCAAGTACTATATTGCACTTTCTATGATGGCTTCAAAAGCATCCTATGAAAACGCAGCTCATATTGAAAGTACAGTCGAAGATCACTGGCTGATGGAATATGTGGGGTTCTATGACTGCTGGAATGAATATCAAGAAAAGGCCTCAACTCAAGTCTTGATTGCTTTGGACAGACATAAAAACCGTGACACTTATGTTGTGGCCTTTAGAGGAACAGAACCTTTCAACGCCGATGATTGGTGCACGGATATCGACATCTCTTGGTACGGAATCCCCGGCGTTGGAAGAATGCACGGCGGCTTCATGAAAGCCTTAGGGCTACAAAAGAATTTAGGGTGGCCGAAGGAGATCGAAAGAGACGAACGCCTTCCCCCATTAGCATATTATGTTATTAGGGACATTCTAAGAAAAGGGTTAAGTGAGAATGAGAATGCCAAGTTCATAGTAACGGGTCATAGTTTGGGTGGAGCACTAGCAATTTTGTTTGCGACGGTTTTGTTTTTGCATGATGAAAAATTGTTGTTGGAGAGGCTTGAAGGGATCTACACGTTTGGGCAACCAAGAGTTGGAGATGAAGCATATGCAATGTATATGAATAAGAAATTGAAGGAACATTGTGTTAGGTATTGTAGGTTTGTTTATTGCAACGACATAGTTCCAAGGTTGCCATATGATGATAAGGAAATGATGTTCAAGCACTTTGGGATATGCCTTTTCTTTGATTGGCGATATCAACTCAAGGTTGTTGAAGAAGAACCCAACAAGAACTACTTCTCTCTGTGGTGTGTGATGCCCATGACAATGAATGCAATATTGGAACTAATAAGGAGCTTCACTATTGCATACCAAAATGGACCTCACTACAAAGAAGGATGGCTTCTTTTCTTTTTCAGGATTATTGGCGTATTAATTCCAGGCTTACCTGCTCATGGTCCCCAAGATTATCTTAATTCCACTCTTTTGGGGCCAATAGAAAAACACCTAAAAGCAGAGTGA 1422 0.4381 MAGAKSEDCNKGFADSYMLLKHADARFMDLLHVLASRNMSRRKFVESHAEGELEESFGHRWLVFISILLQKLLQLVAKPLAFFGFCVELLINLIALNGGLFSIIFNFLTGKLVLPDPRSANYLSCIGNLDVRLKLDGINREDSKYYIALSMMASKASYENAAHIESTVEDHWLMEYVGFYDCWNEYQEKASTQVLIALDRHKNRDTYVVAFRGTEPFNADDWCTDIDISWYGIPGVGRMHGGFMKALGLQKNLGWPKEIERDERLPPLAYYVIRDILRKGLSENENAKFIVTGHSLGGALAILFATVLFLHDEKLLLERLEGIYTFGQPRVGDEAYAMYMNKKLKEHCVRYCRFVYCNDIVPRLPYDDKEMMFKHFGICLFFDWRYQLKVVEEEPNKNYFSLWCVMPMTMNAILELIRSFTIAYQNGPHYKEGWLLFFFRIIGVLIPGLPAHGPQDYLNSTLLGPIEKHLKAE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90851g00006 473 CDD Lipase_3 144 383 - -
Stsc90851g00006 473 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 7 471 IPR044819 GO:0004806|GO:0006629
Stsc90851g00006 473 Pfam Lipase (class 3) 208 368 IPR002921 GO:0006629
Stsc90851g00006 473 SUPERFAMILY alpha/beta-Hydrolases 142 386 IPR029058 -
Stsc90851g00006 473 Gene3D alpha/beta hydrolase 137 411 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90851g00006 Stsc-Chr90851 39369 46929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90851g00006 1 463 Acyl Lipid Metabolism Gene Families AT5G67050 50.636 1.58e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90851g00006 Lipase_3 4.5e-39 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90851g00006 - - gmx:100795779 776.548