Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90846g00005 ATGAAAAAGAACAACAAAAAACATGATTCTATTATTACCCTCTTGTTACTACTTCTAATTTCTTTGTTAATCCACCATGTTAGAGCAAAAAATCCATCTTCTTCTTCTCCTCCTTCTGATTCTAATTCTTCTTCTTCATCAGAAGATGCTGTCTCAAATTTCCAACCAAGCCTTGTTGTTGTGATAGGAATCCTTGGCCTAATGTTCTCACTAACATTTGTTCTTCTTGTTTTTGCCAAATTCTGCCAAAGAGGAGCACTTGTCCCTCTTCTCCACACAGATCAAGACAATCAATTGCTATCAACAAGGTCTAGAACATTCTCAGGAATTGACAAGAATGTTATTGACTCATTACCCTTCTTCAGATTCTCCTCCCTGAAAGGATCAAAGGAAGGTTTGGAATGCTCAGTGTGCTTATCCAAGTTCGAAGATGTCGAAATCCTTAGACTCTTGCCAAAATGTAAGCATGCTTTTCACATTGATTGCATAGATCATTGGCTTGAGAAGCACGCAAGCTGCCCTCTCTGCAGGCACAAGGTCAATCCCGCCGACGAATCCATTTTCGCCTATTCAAACAGCTTGAGGAGGCTTGTTAACAATAATTCGGCCGCGGCCGAAGACTCTAACATCGAGCTTTTCGTCCAAAGAGAGGAGGAGGAGGAGGAAGAACGTCGAGCCTTTCGCGGTTCAACAAGATTTAGTATTGGAAGTATAAGCCTCCGGAGATTGTTTTCGAAGGATGTTAAGGAAGAAGAGTTGCCTATACAGAACAGAACTGATGATTGCGAAAACAAGGACTATCACAAACACAAACACCGGATTACCGTGTCCGATGTTGTGTTCAAGAATAGGTGGAGCAATGTTAGCTCTTCAGATATATTGTTCTTGAACTCGGAATTGCTTAACGAGGTTTCGAGCTCTCGGTTCGACAATGATGTTCTGATGAAGATCAATGCAAATGAAAATGGAAGTGATCATGGAATCTTGAACCTCAAGGAAGAGATGGAGAGGAAGATTTCATTTGAGAGCAAAATTGGTGCAATAAACAAGGTTCTTCCTTCTACTTCTTCTTCTTCTACAAAGCATCATTTGATGAATCAACAACATAGTGAGAAAAGATCAATGTCTGAGATCACAGGAGTTTCAAGATTTGGTAAACAAAACAGGGCATTTGATAAGGATTCTTGTTTGTTTGATGATGAGAAGAATGGTATTAATAACAATAACAATAATGATAATATGAAAGAAGAAAGGATGAGGCAGCTTTGGTTTCCAATTGCAAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAAGAAGATCTCATAATCAACAATCACAGAATATTAATAATAATAACCAAAATTCGTTAGATGTATAG 1380 0.3862 MKKNNKKHDSIITLLLLLLISLLIHHVRAKNPSSSSPPSDSNSSSSSEDAVSNFQPSLVVVIGILGLMFSLTFVLLVFAKFCQRGALVPLLHTDQDNQLLSTRSRTFSGIDKNVIDSLPFFRFSSLKGSKEGLECSVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHASCPLCRHKVNPADESIFAYSNSLRRLVNNNSAAAEDSNIELFVQREEEEEEERRAFRGSTRFSIGSISLRRLFSKDVKEEELPIQNRTDDCENKDYHKHKHRITVSDVVFKNRWSNVSSSDILFLNSELLNEVSSSRFDNDVLMKINANENGSDHGILNLKEEMERKISFESKIGAINKVLPSTSSSSTKHHLMNQQHSEKRSMSEITGVSRFGKQNRAFDKDSCLFDDEKNGINNNNNNDNMKEERMRQLWFPIARRTVQWFVNRERRSHNQQSQNINNNNQNSLDV 459
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90846g00005 459 CDD RING-H2_EL5-like 134 177 - -
Stsc90846g00005 459 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Stsc90846g00005 459 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 439 - -
Stsc90846g00005 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 186 IPR013083 -
Stsc90846g00005 459 Pfam Ring finger domain 134 177 IPR001841 -
Stsc90846g00005 459 MobiDBLite consensus disorder prediction 439 459 - -
Stsc90846g00005 459 MobiDBLite consensus disorder prediction 352 375 - -
Stsc90846g00005 459 FunFam RING-H2 finger protein ATL43 110 184 - -
Stsc90846g00005 459 SUPERFAMILY RING/U-box 114 183 - -
Stsc90846g00005 459 SMART ring_2 135 176 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90846g00005 Stsc-Chr90846 52445 53824 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90846g00005 15 442 C3H Transcription Factor Family AT4G28890 46.014 4.20e-104 315
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90846g00005 K10664 - gmx:100803207 439.884