Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90846g00004 | ATGGGCTGCATCTACTCCCGCGTTTGCATCGGCGACAACTGCGCCGGTGGCGCCGCCGCCAGTATCAACGGTGACGCAATCGCGCGCCCTCTTCCGAGGACTTCATCGTCGGAGCCAGACGAATTCACTGCATCCGCCGCCGCCGCCTCGCCGGACGGCGATTTCCAAGCTCAGAATCAGCTGAGCTTGCCGCGGGACCCGGAGGCCGGAATCAGGAGGCTCGCTAGGGTTTCGTCGCAGTTTCTTCCGCCGGAAGGTTGTAAAGTGGCGAAGGTGCCTTCGTTCAGTTACGAGCTTCGATACTCGTTTCTCTCGCAGAGAGGTTACTACCCTGACGCACTCGACAAGGCGAACCAAGACAGCTTCTGTATCCATACGCCGTTCGGTTCGAGTCCGAATGATCATTTCTTTGGTGTGTTTGATGGACATGGTGAGTTCGGTGCGCAGTGTTCGCAGTTCGTGAAGCAGAAGCTCTGTGAGAATCTTCTTCGGAGTCCGAAATTCCAGAACGACGCCGTTGAGGCTTGTCACAGTGCTTTCCTGGCGACGAATTCGCAGCTGCACAATGATGTGCTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGAGGGAGGACTATAATCGTGGCGAATTCAGGGGATTCGAGGGCGGTGATCGGAGAGAGGAGAGGGAAGGATCTTGTGGCGGTTGATTTGTCGTTGGATCAGACACCGTTTAGGGCTGATGAGCTGGAGAGAGTGAAGATGTGTGGTGCGAGGGTTTTGACTTTGGATCAAATTGAGGGTTTGAAGAATCCTGAAGTTCAGTGTTGGGGAAATGAAGAAGGTGATGATGATGGGGACCCACCTAGGTTGTGGGTCCCAAATGGGATGTACCCTGGGACTGCATTCACAAGGAGCATTGGGGATTCAATTGCTGAGACTATTGGTGTTGTTGCTAACCCTGAGATTGTTGTCTTTGAACTCACCAAGGATCATCCTTTTTTTGTGCTTGCAAGTGATGGTGTATTTGAATTCATCTCTAGCCAAACCGTAGTTGATATGGTTGCAAAGTTCAAAGATCCGCGTGATGCTTGTGCTGCAATAGTGGCTGAATCTTATCGGCTTTGGCTACAGTATGAAACTCGTACAGATGATATCACAATCATCATTGTGCATATAAATGGGCTAACTGAACCTGGTGTCGGTCGGGAAAGAGCATATGGAGAATCTTTACAAACTCCAGCTCCTCAAGTTGTAGAGGTGAAAGGTTCAGAATCTCCGTCTACCCTAGATTGGAACTCTAAGAACCAACGGGTAAGGCATGACTTGTCAAGGGCACGGCTCCGGGCAATTGAAAATTCCCTGGAGAATGGGCAAGCTTGGGTTCCTCCATCTTCAGCGCATAGGAAGACATGGGAGGAAGAAGCACACATAGAACGAGCACTGCATGATCATTTTCTCTTCCGAAAACTTACCGCTTCTCAATGTAATGTTCTATTGGATTCCATGGAAAGAGTTGAAGTGCAACCTGGTGATATTGTTGTCAAACAGGGCAGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAAGTCTTGGCAACTCAGGAAGAAAAGGATGGGGAAGTAACCAAGGTTTTACAGCGTTACACATCGGAAAAACTATCATGCTTTGGAGAGCTTGCTCTAATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACTAAAGGAACTCTTTGGGCTTTAAAGCGTGAAGATTTTCGAGGGATTCTAATGTCAGAATTCTCTAACTTGTCATCCTTGAAGTTGCTTCGATCTGTAGATCTCCTGTCAAGATTGTCAATTTTACAACTGAGTCAGATTTCTGACTCCCTCTCTGAAGTCTCCTATGCAAGTGGGCAGACAATAATTGATTGTGGTGAAGTCCATGGATTGTACATAATTCAGAAGGGACAAGTGAAAATCACTTTTGATGCGGATTTATTGATGAATCCAAATGTTTGCAGCCTCTATCCTGATTTTGAAAATGTGAATGATGATGATGCACAGAGCGGAAGAGAACTGTCAATAGAGAAGCAAGAGGGAAGATATTTTGGTGAATGGTCCCTTCTTGGGGAAAAAGTTGGTCCCTTAAGTGCTGTTGCTGTGGGTGACGTTGTATGTGCTGTATTAACAAAAGAGAAATTTGAATCTGTTGTTGGCTCCATACAAAAGATTTCTCAGGAGGATCGCAAGTCAAGACATAATTCCAAAGAGTTTACAAGAAATGTTGACTTTTCATCCCTCGGAAAAGGCCAGCTCTCAGATTTGGAGTGGATAAAGAGTGTCTATTCTACTGACTGCTCTGATATTGGGCTTGTAAAGTTTGGGGAAGCAGAAAATTTGCTTACATTGAAGAGATTTTCCAAGCCAAAAGTGAAAAGGCTGGGAAAAGAAGCACAAGTCTTGAAAGAGAAAGACTTGATTAAGGGTGTGAGCTCTTCAGCATGTGTACCACAGGTTTTATGCACTTCTGCCGACCGCATATATGCTGGAATAGTGTTAAATACACGCCTTGCTTGCCCTTTGTCTTCCATACTTTCGAGTCCTTTTGGTGAATCGGCCGCACAATTTTGTGCTGCATCTGTTGTTATTGCTTTAGAAGATTTGCACAAGAATGGTGTTCTCTACCGAGGAGTGTCGCCTGATGTTGTGATGTTGGACCAAACAGGGCAGATACAGCTGGTCGACTTCAGATTTAGTAAGAAGCTTGCTGGCGAAAGAACATTCACAATTTGTGGGATGGCAGATTCACTAGCTCCAGAGATTGTGTTGGGGAAAGGTCACAGTTTCCCTGCTGACTGGTGGGCATTAGGAGTTTTGATATATTTTATGCTACGAGGTGAAATGCCATTTGGATCATGGAGGGAAAACGAACTTGATACAGTTGCCAAAATCGCGAAACGAAAGCTACATCTTCCTGATGAATTTAACCCTGAAGCTGTTGATCTAATATCCAAGTTACTTGATGTGGAAGAAACCACTAGACTTGGTAGCCAAGGTACTGATTCTGTCAAGAGTCACCCATGGTTTAATGGTGTTGAATGGGAAGGGATTCGCCACCGTACTTTTCCCGTTCCTCAGGAAATCATTTCTCGTGTTACACAATACTTGGAAGTTCATTCTGAGGATTGCACTGGTTCTCTAGGTTCCCCATTACAGGAGGTAGAAGAACTAAATGTGCCTGAATGGCTTGAGGACTGGTAA | 3252 | 0.4616 | MGCIYSRVCIGDNCAGGAAASINGDAIARPLPRTSSSEPDEFTASAAAASPDGDFQAQNQLSLPRDPEAGIRRLARVSSQFLPPEGCKVAKVPSFSYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGSSPNDHFFGVFDGHGEFGAQCSQFVKQKLCENLLRSPKFQNDAVEACHSAFLATNSQLHNDVLDDSMSGTTAITVLVRGRTIIVANSGDSRAVIGERRGKDLVAVDLSLDQTPFRADELERVKMCGARVLTLDQIEGLKNPEVQCWGNEEGDDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTKDHPFFVLASDGVFEFISSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITIIIVHINGLTEPGVGRERAYGESLQTPAPQVVEVKGSESPSTLDWNSKNQRVRHDLSRARLRAIENSLENGQAWVPPSSAHRKTWEEEAHIERALHDHFLFRKLTASQCNVLLDSMERVEVQPGDIVVKQGSEGDCFYVVGSGEFEVLATQEEKDGEVTKVLQRYTSEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSYASGQTIIDCGEVHGLYIIQKGQVKITFDADLLMNPNVCSLYPDFENVNDDDAQSGRELSIEKQEGRYFGEWSLLGEKVGPLSAVAVGDVVCAVLTKEKFESVVGSIQKISQEDRKSRHNSKEFTRNVDFSSLGKGQLSDLEWIKSVYSTDCSDIGLVKFGEAENLLTLKRFSKPKVKRLGKEAQVLKEKDLIKGVSSSACVPQVLCTSADRIYAGIVLNTRLACPLSSILSSPFGESAAQFCAASVVIALEDLHKNGVLYRGVSPDVVMLDQTGQIQLVDFRFSKKLAGERTFTICGMADSLAPEIVLGKGHSFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPDEFNPEAVDLISKLLDVEETTRLGSQGTDSVKSHPWFNGVEWEGIRHRTFPVPQEIISRVTQYLEVHSEDCTGSLGSPLQEVEELNVPEWLEDW | 1083 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90846g00004 | 1083 | CDD | CAP_ED | 611 | 736 | IPR000595 | - | |
| Stsc90846g00004 | 1083 | SUPERFAMILY | cAMP-binding domain-like | 450 | 595 | IPR018490 | - | |
| Stsc90846g00004 | 1083 | FunFam | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein | 459 | 599 | - | - | |
| Stsc90846g00004 | 1083 | Gene3D | Phosphorylase Kinase; domain 1 | 770 | 856 | - | - | |
| Stsc90846g00004 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 521 | 535 | - | - | |
| Stsc90846g00004 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 731 | 743 | - | - | |
| Stsc90846g00004 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 556 | 565 | - | - | |
| Stsc90846g00004 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 506 | 520 | - | - | |
| Stsc90846g00004 | 1083 | Pfam | Protein kinase domain | 795 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc90846g00004 | 1083 | Gene3D | - | 94 | 392 | IPR036457 | - | |
| Stsc90846g00004 | 1083 | SMART | PP2C_4 | 101 | 389 | IPR001932 | - | |
| Stsc90846g00004 | 1083 | SUPERFAMILY | cAMP-binding domain-like | 603 | 739 | IPR018490 | - | |
| Stsc90846g00004 | 1083 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 485 | 594 | IPR000595 | - | |
| Stsc90846g00004 | 1083 | Pfam | Protein phosphatase 2C | 126 | 370 | IPR001932 | - | |
| Stsc90846g00004 | 1083 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 611 | 736 | IPR000595 | - | |
| Stsc90846g00004 | 1083 | Pfam | Cyclic nucleotide-binding domain | 504 | 595 | IPR000595 | - | |
| Stsc90846g00004 | 1083 | Pfam | Cyclic nucleotide-binding domain | 630 | 735 | IPR000595 | - | |
| Stsc90846g00004 | 1083 | SMART | cnmp_10 | 611 | 750 | IPR000595 | - | |
| Stsc90846g00004 | 1083 | SMART | cnmp_10 | 485 | 608 | IPR000595 | - | |
| Stsc90846g00004 | 1083 | SUPERFAMILY | Protein kinase-like (PK-like) | 796 | 1055 | IPR011009 | - | |
| Stsc90846g00004 | 1083 | ProSitePatterns | PPM-type phosphatase domain signature. | 136 | 144 | IPR000222 | GO:0043169 | |
| Stsc90846g00004 | 1083 | ProSiteProfiles | Protein kinase domain profile. | 758 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc90846g00004 | 1083 | Gene3D | Transferase(Phosphotransferase) domain 1 | 857 | 1042 | - | - | |
| Stsc90846g00004 | 1083 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 465 | 1043 | - | - | |
| Stsc90846g00004 | 1083 | SMART | serkin_6 | 707 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc90846g00004 | 1083 | SUPERFAMILY | PP2C-like | 83 | 393 | IPR036457 | - | |
| Stsc90846g00004 | 1083 | ProSiteProfiles | PPM-type phosphatase domain profile. | 100 | 391 | IPR001932 | - | |
| Stsc90846g00004 | 1083 | FunFam | Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein | 95 | 393 | - | - | |
| Stsc90846g00004 | 1083 | Gene3D | Jelly Rolls | 600 | 755 | IPR014710 | - | |
| Stsc90846g00004 | 1083 | Gene3D | Jelly Rolls | 458 | 599 | IPR014710 | - | |
| Stsc90846g00004 | 1083 | CDD | PP2Cc | 116 | 391 | IPR001932 | - | |
| Stsc90846g00004 | 1083 | MobiDBLite | consensus disorder prediction | 30 | 60 | - | - | |
| Stsc90846g00004 | 1083 | CDD | CAP_ED | 485 | 594 | IPR000595 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90846g00004 | Stsc-Chr90846 | 39226 | 47409 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90846g00004 | 1 | 1083 | PP2C-type Phosphatase Gene Family | AT2G20050 | 67.486 | 0.0 | 1454 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | AGC_PKA-PKG | Stsc90846g00004 | PP2C | 2.1e-35 | CL0238 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90846g00004 | - | - | gmx:100799821 | 1771.13 |