Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90842g00003 ATGATGCAGCCAGGACCCGGAATGCCTCCACCAACCATGGGCCAGCAGCCACCGCAGCAGTACCAACAGCAGCCGCCGCAGCAGCAACCGCCTTACATGATGATGCCGCCTCAGCAGGCGCCGCCACCCATGTGGGCTCCCTCCGCCCAGGCGCCGCCTCAGCAGGTTTCTCAGCAGCAGCAATCGGCTCAGCCCACCAGCGCTGACGAGGTCCGCACCCTCTGGATCGGCGACTTGCAGTACTGGATGGACGAGAACTACCTCTTCAACTGTTTCGCTCACACCGGCGAGGTGACCTCAGTAAAGGTTATTAGGAACAAGCAAACTGGTCAGACTGAGGGTTATGGTTTCATTGAGTTTGGTAGCCGGGCCGGAGCTGAGAGAGTGCTTCAGTCATATAACGGAACGATTATGCCGAATGGTGGGCAGAGCTTCAGATTGAACTGGGCTACTTTTAGTGCTGGTGAGAAGCGTCACGATGATAGTCCAGATCACACCATATTTGTTGGTGATTTGGCTGCAGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGACTCGATATAACTCAGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACTGGCCGGACTAAGGGTTATGGTTTCGTAAGGTTTGCGGATGAAAGTGAACAAATGAGGGCCATGACTGAGATGCAAGGGGTTCTTTGTTCTACTAGACCCATGAGGATTGGACCGGCCTCTAATAAAAATCCTGCCACTCAGCAGAAAGCATCTTATCAGAATCCTCAAGGTGCACAGAACGAGAATGATCCAAATAATACAACAATTTTTGTTGGGAATTTGGACCCCAATGTCACTGACGATCTTCTGAGACAAGTTTTCGGTCAGTACGGAGAGTTAGTTCATGTGAAGATTCCAACAGGCAAGCGATGCGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCGCTAAGGGTTTTGAATGGATCCCCGTTGGGTGGACAAAATGTACGGCTTTCGTGGGGCCGCAGTCCTTCAAACAAACAGTCTCAGTCAGATTCAAACCAATGGAGTGGAGGGAGTGGTAGTGCCGGGAGTGGTGGATATTATGGATATGCTCAAGGTTATGAAAATTATGGTTATGCTCCTGCTGCACAAGACCCCAACATGTATGGCAGTTATCCAGGGTATCCTAACTACCAACCTCCGCAGCAACAGCAACAATTAGGATATAGTTGA 1233 0.5045 MMQPGPGMPPPTMGQQPPQQYQQQPPQQQPPYMMMPPQQAPPPMWAPSAQAPPQQVSQQQQSAQPTSADEVRTLWIGDLQYWMDENYLFNCFAHTGEVTSVKVIRNKQTGQTEGYGFIEFGSRAGAERVLQSYNGTIMPNGGQSFRLNWATFSAGEKRHDDSPDHTIFVGDLAADVTDYLLQETFRTRYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNPATQQKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDLLRQVFGQYGELVHVKIPTGKRCGFVQFADRSCAEEALRVLNGSPLGGQNVRLSWGRSPSNKQSQSDSNQWSGGSGSAGSGGYYGYAQGYENYGYAPAAQDPNMYGSYPGYPNYQPPQQQQQLGYS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90842g00003 410 Gene3D - 164 240 IPR012677 -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 236 273 - -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 335 361 - -
Stsc90842g00003 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 244 IPR000504 GO:0003723
Stsc90842g00003 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 139 IPR000504 GO:0003723
Stsc90842g00003 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 335 IPR000504 GO:0003723
Stsc90842g00003 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 230 IPR000504 GO:0003723
Stsc90842g00003 410 FunFam Polyadenylate-binding protein RBP45 10 156 - -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 23 49 - -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 389 410 - -
Stsc90842g00003 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 152 IPR000504 GO:0003723
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 1 68 - -
Stsc90842g00003 410 FunFam Polyadenylate-binding protein RBP45C 157 248 - -
Stsc90842g00003 410 SUPERFAMILY RNA-binding domain, RBD 252 369 IPR035979 GO:0003676
Stsc90842g00003 410 SUPERFAMILY RNA-binding domain, RBD 33 153 IPR035979 GO:0003676
Stsc90842g00003 410 Gene3D - 71 151 IPR012677 -
Stsc90842g00003 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 342 IPR000504 GO:0003723
Stsc90842g00003 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 346 - -
Stsc90842g00003 410 FunFam Polyadenylate-binding protein RBP45C 249 381 - -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 239 273 - -
Stsc90842g00003 410 SMART rrm1_1 271 338 IPR000504 GO:0003723
Stsc90842g00003 410 SMART rrm1_1 166 240 IPR000504 GO:0003723
Stsc90842g00003 410 SMART rrm1_1 73 148 IPR000504 GO:0003723
Stsc90842g00003 410 CDD RRM1_SECp43_like 73 153 - -
Stsc90842g00003 410 CDD RRM2_SECp43_like 164 243 - -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 396 410 - -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 50 68 - -
Stsc90842g00003 410 MobiDBLite consensus disorder prediction 1 16 - -
Stsc90842g00003 410 SUPERFAMILY RNA-binding domain, RBD 156 259 IPR035979 GO:0003676
Stsc90842g00003 410 Gene3D - 243 379 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90842g00003 Stsc-Chr90842 10649 14361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90842g00003 269 348 Eukaryotic Initiation Factors Gene Family AT4G34110 37.931 5.02e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90842g00003 - - aprc:113864230 580.867