Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90841g00004 ATGAGCGAGAAGTTTTGTATGAGTGATGAAGATAAGGGTGTGTTGGAATCTGTGTTGGGTGCAGAAGCTGTTGCATACTTTGTTTCTGCACTTTCCAATAACGTCTTCTCCAGTGTGGTAGCTTCTGCTTCGGCTTTGGCCGGCTCTGATACCGGCCTCCTGCGGCGGCTGTGCCAGGTTGTTGAGGGTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGGCCTGAAATCTGGTGGCTCGGCATTGATTTGGGGCGACGGGCAATGCCGCGATCCCAAAGGGGGTGGATCTGGCGAGGGAGGATCCGAAGGGGATGGGAGTGGAGTTAGTAAGGGTGATGAAGAGGAGCTGAGAAAGAAAGTGCTCAAGAAACTTGATGCATACTTTGCTTGCTCTATGTCGAAAGAGGCGAATTATGCAAGGCTAGATAGGGTTTCGGATTTGCATATGTTTTACTTGGCTTCAATGTATTATATATTTGGTCTCGATTCGCCTTGTGGCCCTGGCAATTCTTTCAAGTCTGGCAAATCAATTTGGGTTTCTGATGCTGCTAGCTGTTCTCACCAACTAGAATCAAGATCATTTCTGGGGAGGTTGGCTGGTCTTCAAACAGTTGTTTTCTTGCCTCTTAAAGCCGGAGTTGTTGAGCTTGGTTCCGTGGAATCAATGCCTGAAGACCAGGGTGTTTCGGATTTGGTCAGGACAGCATTTGGTGAATCTAGTTCTGGACAGGCGAAGGCATTTCCGAAGATTTTTGGGCGTGAATTAAGCGTTGGTGGAGGGGATGCGAAATCTCAGTCAATAACCATTAGTTTCTCGCCCAAGGTGGAAGATGATTCTGCTTTCACTTCAGACTCTTTTGAAGTTCAAGCTCTAGCAGCAAACCATGCATATGGGAATCCTTCTAATGGAAGCATGGGTGAAAATAACGAAGCGAAATTGTTCCCTCAAATGATTGGTGGGAATTACAATGCTCAAGCAAGGGTTTCTTCGCTAGATCTTGGTAATGAAGACTCATCCTCGACTCATCTGGACGAGCGGAAGCCCAGAAAAAGAGGTAGAAAGCCTGCTAATGGAAGAGAGGAACCTCTTAATCATGTTGAAGCAGAGAGACAAAGGAGGGAGAAGCTTAACCAAAGATTCTACGCCTTGAGAGCTGTTGTTCCGAATATATCTAAAATGGACAAGGCATCTCTACTTGGTGACGCGATTACCTATATCACTGATCTGCAGATGAAGATCAAGGTATTGGAAGCAGAGAAGAACATGAATAACAACAATGAACCAACGTTGCCTTTTTCGGATATAGATTTCCAAGCCAGAGAGGATGACACAGCAGTCGTGCGAGTAAGTTGCCCCTTGGATCTCCACCCGGTTTCCAGAGTCATTAAGACATTCCAGGAGCATCAAATTATGGCTCCAGAGTCCAGTGTTTCAGCATCAGAGGGAAAGATGATTCATACATTCTCCATAAGAACGCAAGGCAGCGAGGCTGCTGCAATACAGTTGAAGGAAAAGCTTGAAGCATCCCTATCCAAAAAGTGA 1551 0.4616 MSEKFCMSDEDKGVLESVLGAEAVAYFVSALSNNVFSSVVASASALAGSDTGLLRRLCQVVEGSKWNYAVFWQVAGLKSGGSALIWGDGQCRDPKGGGSGEGGSEGDGSGVSKGDEEELRKKVLKKLDAYFACSMSKEANYARLDRVSDLHMFYLASMYYIFGLDSPCGPGNSFKSGKSIWVSDAASCSHQLESRSFLGRLAGLQTVVFLPLKAGVVELGSVESMPEDQGVSDLVRTAFGESSSGQAKAFPKIFGRELSVGGGDAKSQSITISFSPKVEDDSAFTSDSFEVQALAANHAYGNPSNGSMGENNEAKLFPQMIGGNYNAQARVSSLDLGNEDSSSTHLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVLEAEKNMNNNNEPTLPFSDIDFQAREDDTAVVRVSCPLDLHPVSRVIKTFQEHQIMAPESSVSASEGKMIHTFSIRTQGSEAAAIQLKEKLEASLSKK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90841g00004 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 429 IPR036638 GO:0046983
Stsc90841g00004 516 PANTHER MYC 44 512 IPR045084 GO:0003700|GO:0006355
Stsc90841g00004 516 MobiDBLite consensus disorder prediction 94 116 - -
Stsc90841g00004 516 SMART finulus 369 418 IPR011598 GO:0046983
Stsc90841g00004 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 412 IPR011598 GO:0046983
Stsc90841g00004 516 Coils Coil 409 429 - -
Stsc90841g00004 516 Gene3D - 356 429 IPR036638 GO:0046983
Stsc90841g00004 516 MobiDBLite consensus disorder prediction 341 374 - -
Stsc90841g00004 516 FunFam Transcription factor bHLH13 356 430 - -
Stsc90841g00004 516 CDD bHLH_AtAIB_like 360 423 - -
Stsc90841g00004 516 MobiDBLite consensus disorder prediction 335 374 - -
Stsc90841g00004 516 Pfam Helix-loop-helix DNA-binding domain 367 413 IPR011598 GO:0046983
Stsc90841g00004 516 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 239 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90841g00004 Stsc-Chr90841 15811 17642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90841g00004 1 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.409 2.77e-150 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90841g00004 bHLH-MYC_N 7.6e-40 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90841g00004 - - adu:107473437 884.019